Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 6
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g074550.2.1 | Tomato | plastid | 84.28 | 90.38 |
| PGSC0003DMT400097200 | Potato | cytosol, mitochondrion | 44.97 | 78.93 |
| TraesCS3B01G080400.1 | Wheat | golgi, unclear | 68.83 | 70.68 |
| TraesCS3A01G067300.1 | Wheat | mitochondrion | 68.83 | 70.48 |
| TraesCS3D01G066900.1 | Wheat | mitochondrion | 68.69 | 70.34 |
| HORVU1Hr1G057910.4 | Barley | cytosol | 38.34 | 69.85 |
| Zm00001d027762_P001 | Maize | cytosol | 20.97 | 69.72 |
| Os08t0295300-01 | Rice | golgi, plasma membrane | 71.03 | 69.13 |
| Zm00001d032667_P005 | Maize | mitochondrion | 69.93 | 68.79 |
| HORVU3Hr1G012410.6 | Barley | mitochondrion | 68.83 | 68.73 |
| TraesCS1B01G248400.1 | Wheat | cytosol | 55.86 | 68.64 |
| EER91117 | Sorghum | mitochondrion | 69.52 | 68.2 |
| TraesCS1A01G235200.1 | Wheat | cytosol | 63.86 | 67.49 |
| TraesCS1D01G236900.1 | Wheat | cytosol, mitochondrion | 56.28 | 67.0 |
| Zm00001d013607_P003 | Maize | mitochondrion | 69.38 | 61.49 |
| GSMUA_Achr1P18790_001 | Banana | cytosol | 18.76 | 49.82 |
| Solyc07g064750.1.1 | Tomato | cytosol | 14.76 | 44.03 |
| Solyc07g048080.2.1 | Tomato | nucleus | 33.79 | 36.4 |
Protein Annotations
Description
No Description!
Coordinates
chr5:+:614255..624929
Molecular Weight (calculated)
83449.9 Da
IEP (calculated)
7.867
GRAVY (calculated)
-0.423
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLASPLCWR LFTQSIRRPP PPCKHFSILR RCFSSTPPMG KTAKSCEANS SASIPKDETY LENVIPKRIA LFESIQNQQR LQRLALSPDP IKIELVDGTI
101: KEGKKWNTTP LDIAKEISKS LAANALIAKV NGVLWDLSRP LEGDCKLEIF KFETDEGRDT FWHSSAHILG ESLERTFGCK LCIGPCTTRG EGFYYDAFYG
201: DLGLNEDHFQ RIKEEATKAV SEKQPFERIE VSRQQALDMF SDNRFKVEII KDLPEDKTIT VYRCGPLVDL CRGPHIPNTS FVKALACTKA SSAYWRGDKD
301: RESLQRVYGI SFPDQKQLKV YLDMLAEAKK YDHRELTKKQ ELFFFHPLSP GSCFFLPHGA RICNKLLEFI KSQYWKRGYK EVWSPNMYNM QLWETSGHAA
401: NYKENMFVFE IEKQEFGLKP MNCPGHCLIF DHRVRSYREL PLRLADFGVL HRNEASGALT GLTRVRRFQQ DDAHIFCRES QIKEEVKGVL DFISYVYEIF
501: GFTFNLKLST RPEKYLGDLE SWEKAEAALA EALNEFGKPW EINEGDGAFY GPKIDITVSD AMKRKFQCAT LQLDFQLPQR FNLSYSAEDE SKRERPVMIH
601: RAILGSVERM FAILLEHFKG KWPFWLSPRQ AMVCPVSDKS LSYAFELRER IHDAGYYVDV DTSDRTIQKK VREAQMAQYN YILVVGEAEA SSGQVSVRVR
701: SKSDHEVMTV DGLLTHFKDL VASFQ
101: KEGKKWNTTP LDIAKEISKS LAANALIAKV NGVLWDLSRP LEGDCKLEIF KFETDEGRDT FWHSSAHILG ESLERTFGCK LCIGPCTTRG EGFYYDAFYG
201: DLGLNEDHFQ RIKEEATKAV SEKQPFERIE VSRQQALDMF SDNRFKVEII KDLPEDKTIT VYRCGPLVDL CRGPHIPNTS FVKALACTKA SSAYWRGDKD
301: RESLQRVYGI SFPDQKQLKV YLDMLAEAKK YDHRELTKKQ ELFFFHPLSP GSCFFLPHGA RICNKLLEFI KSQYWKRGYK EVWSPNMYNM QLWETSGHAA
401: NYKENMFVFE IEKQEFGLKP MNCPGHCLIF DHRVRSYREL PLRLADFGVL HRNEASGALT GLTRVRRFQQ DDAHIFCRES QIKEEVKGVL DFISYVYEIF
501: GFTFNLKLST RPEKYLGDLE SWEKAEAALA EALNEFGKPW EINEGDGAFY GPKIDITVSD AMKRKFQCAT LQLDFQLPQR FNLSYSAEDE SKRERPVMIH
601: RAILGSVERM FAILLEHFKG KWPFWLSPRQ AMVCPVSDKS LSYAFELRER IHDAGYYVDV DTSDRTIQKK VREAQMAQYN YILVVGEAEA SSGQVSVRVR
701: SKSDHEVMTV DGLLTHFKDL VASFQ
001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV
Arabidopsis Description
THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.