Factsheet for TraesCS3B01G080400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G066900.1	Wheat	mitochondrion	96.88	96.61
TraesCS3A01G067300.1	Wheat	mitochondrion	96.74	96.47
HORVU3Hr1G012410.6	Barley	mitochondrion	93.2	90.63
Os08t0295300-01	Rice	golgi, plasma membrane	86.97	82.42
GSMUA_Achr1P18800_001	Banana	cytosol	59.21	80.69
Zm00001d032667_P005	Maize	mitochondrion	82.44	78.97
EER91117	Sorghum	mitochondrion	81.73	78.08
TraesCS1B01G248400.1	Wheat	cytosol	64.31	76.95
Zm00001d027762_P001	Maize	cytosol	23.51	76.15
VIT_01s0026g00340.t01	Wine grape	cytosol	71.95	74.05
VIT_19s0015g00470.t01	Wine grape	cytosol	71.53	73.62
Solyc08g074550.2.1	Tomato	plastid	70.25	73.37
CDY19754	Canola	cytosol	61.76	71.59
Zm00001d013607_P003	Maize	mitochondrion	82.15	70.9
KRH69521	Soybean	endoplasmic reticulum, nucleus	70.54	70.14
KRH74628	Soybean	endoplasmic reticulum	70.96	69.87
Solyc05g005800.2.1	Tomato	plastid	70.68	68.83
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	39.24	67.07
AT5G26830.1	Thale cress	mitochondrion	67.14	66.85
Bra009922.1-P	Field mustard	mitochondrion	67.71	66.57
CDX88245	Canola	mitochondrion	67.71	66.57
Bra036596.1-P	Field mustard	mitochondrion	66.57	66.48
CDX80596	Canola	extracellular	66.57	65.83
CDX87030	Canola	mitochondrion, plastid	66.29	65.09
PGSC0003DMT400076047	Potato	cytosol	17.99	63.18
Bra031021.1-P	Field mustard	cytosol	50.42	61.7
CDY21715	Canola	cytosol	54.67	61.47
AT1G17960.1	Thale cress	cytosol	38.81	59.83
Bra031009.1-P	Field mustard	cytosol	28.75	54.42
CDY21726	Canola	cytosol	33.57	54.36
CDX81854	Canola	cytosol	33.0	53.81
AT1G18130.1	Thale cress	cytosol	12.32	52.73
Solyc07g064750.1.1	Tomato	cytosol	13.46	39.09
TraesCS6B01G310700.1	Wheat	plastid	33.57	36.63

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039
InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824
PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46
SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS
InterPro:TGS-like	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	EnsemblPlantsGene:TraesCS3B01G080400
EnsemblPlants:TraesCS3B01G080400.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00771	TIGR:cd00860	TIGR:cd01667
SEG:seg	InterPro:tRNA_SAD	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:50907270..50916442

Molecular Weight (calculated)

80774.1 Da

IEP (calculated)

6.984

GRAVY (calculated)

-0.317

Length

706 amino acids

Sequence
(BLAST)

001: MLICLRRGLS LLRQRQPPPR LLLHLSAEPM GDPAVAPDAP YLDAVTQKRI RIFEEIQARQ ALERLNIGGD SIRVTLPDGA IKEGKKWIST PMDIASGIST
101: GLAASCLIAQ VNGVLWDMTR PLEGDCDLKL FKFDSNEGRD TFWHSSAHIL GESLERVYGC KLCIGPCTTR GEGFYYDAHY KDLTLNDTHF GLIDKQAKKA
201: VAEKQPFERI EVSRAEALEV FAENEFKVEI INELPEDKTI TVYRCGPLVD LCRGPHIPNT SFVKAFACLK ASASYWRGKA DRESLQRVYG ISFPDSKRLK
301: EYQHMIEEAK KRDHRLLGQS QKLFFFHPLS PGSCFFLPNG AIIYNKLMDF LRKEYRERGY QEVLSPNIYN MQLWETSGHA ANYKDNMFVF EIEKQEFGLK
401: PMNCPGHCLM FGHEVRSYRE LPLRMADFGV LHRNELSGAL TGLTRVRRFQ QDDAHIFCME SQIKDEVRAC LEFIDYVYKI FGFEYELELS TRPEKYLGDI
501: ETWNKAEQQL TEALNEFGKP WKINEADGAF YGPKIDIGVF DALKRKFQCA TLQLDFQLPL RFKLTYSAED EAKLERPVMI HRAILGSVER MFAILLEHYN
601: GKWPLWLSPR QAIVCCVSAN SLTYAKEVHA QIRAAGFHVD IDMTDRTIQK KVREAQLAQF NYILVVGAKE AESGKVSLRV RDRADLSTES IADVIARFND
701: EVASFQ

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.