CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031009.1-P	Field mustard	cytosol	84.17	98.39
CDX81854	Canola	cytosol	93.58	94.23
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	53.44	56.42
CDY21715	Canola	cytosol	63.3	43.95
CDY19754	Canola	cytosol	57.8	41.38
VIT_01s0026g00340.t01	Wine grape	cytosol	58.95	37.46
VIT_19s0015g00470.t01	Wine grape	cytosol	58.72	37.32
CDX80596	Canola	extracellular	60.78	37.11
TraesCS1B01G248400.1	Wheat	cytosol	50.0	36.95
CDX88245	Canola	mitochondrion	60.78	36.91
CDX87030	Canola	mitochondrion, plastid	60.55	36.72
KRH69521	Soybean	endoplasmic reticulum, nucleus	56.65	34.79
KRH74628	Soybean	endoplasmic reticulum	56.65	34.45
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	47.48	33.99
Zm00001d027762_P001	Maize	cytosol	16.97	33.95
TraesCS3D01G066900.1	Wheat	mitochondrion	54.59	33.62
TraesCS3B01G080400.1	Wheat	golgi, unclear	54.36	33.57
TraesCS1A01G235200.1	Wheat	cytosol	52.75	33.53
TraesCS3A01G067300.1	Wheat	mitochondrion	54.36	33.47
Os08t0295300-01	Rice	golgi, plasma membrane	56.65	33.15
Zm00001d032667_P005	Maize	mitochondrion	55.73	32.97
HORVU3Hr1G012410.6	Barley	mitochondrion	54.59	32.78
EER91117	Sorghum	mitochondrion	55.05	32.48
Zm00001d013607_P003	Maize	mitochondrion	55.05	29.34
Solyc07g064750.1.1	Tomato	cytosol	15.6	27.98
HORVU1Hr1G057910.4	Barley	cytosol	23.62	25.88
CDY50043	Canola	plastid	32.8	21.93
CDX93065	Canola	plastid	32.8	21.7
GSMUA_Achr1P18790_001	Banana	cytosol	4.82	7.69

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078G8L2	UniProt:A0A078G8L2
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDY21726	ProteinID:CDY21726	ProteinID:CDY21726.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00016227001	InterPro:IPR006195	InterPro:IPR036621	PFAM:PF00587	PFAM:PF03129
PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SUPFAM:SSF52954	SUPFAM:SSF55681
InterPro:Thr-tRNA-ligase_IIa	InterPro:ThrRS_core	UniParc:UPI0004EEAB35	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	:

Description

BnaA09g44770DBnaA09g44770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8L2]

Coordinates

chrLK032123:+:391028..393796

Molecular Weight (calculated)

50501.2 Da

IEP (calculated)

6.169

GRAVY (calculated)

-0.491

Length

436 amino acids

Sequence
(BLAST)

001: MADNHPEDEP SLSVVIQNTS SVKQDDLFLC QKMSPGSCFL LPHGTRVYNK LIEFIKKEYW KRGYEEVISP NIYNMKLWET SKDAASYKEN LFTFDIDKQE
101: FGLKSINGPG HCLMFEHRVR SYRELPIRLA EFGVLHLNEA SEALSGLTHT RRFQQDDAHI FCTKEQVKKE VKDVLDFVDY VYTKFGFTYE LKLLTRPEEN
201: TKDLQRWEES ENDLVEALQE FGKPFTVVNR GEGALCGPKI DITLSDAMKR KFQCASIQLD FQLPDHFKLR YSPSDEEKKE NVMIHSKVLG SEDKEKGVRP
301: VMIHRTVLGS FERMLAILLD HYKGKWPFWI SPRQVIVCSS SNNENHRSYA EEVRRQIHEA GYHVEVDTTD RNISEKVGEA EIAQYNYILV VGDEEVATRQ
401: VTALLRDSSC SDRSKVPMMS VDALLDVFKL RIVKFL

Best Arabidopsis Sequence Match ( AT1G17960.1 )
(BLAST)

001: MANNHHPKDE AYLSSVIPKR IRLFEEIQAE QLEQLQSRPH DPIKITLLPD GIEKEGRRWE TSPMDIAVQI SKGLAKSALV SSVNHVLWDM NRPLEGDCSL
101: EIFGFDSDQG RNTFWHSSAH ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL HRNEDSGALG GMTRVRRFVQ
201: DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT
301: IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV
401: ADARDAPYNY ILVVGQKEVA TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL

Arabidopsis Description

Probable threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.