CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21726	Canola	cytosol	94.23	93.58
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	53.35	55.93
CDY21715	Canola	cytosol	62.59	43.15
CDY19754	Canola	cytosol	57.27	40.72
VIT_01s0026g00340.t01	Wine grape	cytosol	58.43	36.88
VIT_19s0015g00470.t01	Wine grape	cytosol	58.2	36.73
CDX80596	Canola	extracellular	60.51	36.69
CDX88245	Canola	mitochondrion	60.51	36.49
CDX87030	Canola	mitochondrion, plastid	60.28	36.3
TraesCS1B01G248400.1	Wheat	cytosol	48.73	35.76
KRH69521	Soybean	endoplasmic reticulum, nucleus	56.35	34.37
Zm00001d027762_P001	Maize	cytosol	17.09	33.95
KRH74628	Soybean	endoplasmic reticulum	56.12	33.89
TraesCS3D01G066900.1	Wheat	mitochondrion	54.04	33.05
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	46.42	33.0
TraesCS3B01G080400.1	Wheat	golgi, unclear	53.81	33.0
TraesCS3A01G067300.1	Wheat	mitochondrion	53.81	32.91
Zm00001d032667_P005	Maize	mitochondrion	55.66	32.7
TraesCS1A01G235200.1	Wheat	cytosol	51.73	32.65
Os08t0295300-01	Rice	golgi, plasma membrane	55.89	32.48
HORVU3Hr1G012410.6	Barley	mitochondrion	54.27	32.37
EER91117	Sorghum	mitochondrion	54.97	32.21
Zm00001d013607_P003	Maize	mitochondrion	54.97	29.1
Solyc07g064750.1.1	Tomato	cytosol	15.94	28.4
HORVU1Hr1G057910.4	Barley	cytosol	23.33	25.38
CDY50043	Canola	plastid	32.33	21.47
CDX93065	Canola	plastid	32.33	21.24
GSMUA_Achr1P18790_001	Banana	cytosol	4.62	7.33

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.930.10	Gene3D:3.40.50.800	GO:A0A078D0S3	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	EnsemblPlants:CDX81854	ProteinID:CDX81854	ProteinID:CDX81854.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00136800001	InterPro:IPR006195	InterPro:IPR036621	PFAM:PF00587	PFAM:PF03129	PRINTS:PR01047
PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SUPFAM:SSF52954	SUPFAM:SSF55681	InterPro:Thr-tRNA-ligase_IIa
InterPro:ThrRS_core	UniParc:UPI0004EED86C	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	:	:

Description

BnaC08g37470D

Coordinates

chrLK031826:-:1118321..1121098

Molecular Weight (calculated)

50297.1 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.503

Length

433 amino acids

Sequence
(BLAST)

001: MADNHPEDEP SLSVVIQNTS SVKQDELFHC HKMSPGSCFL LPHGTRVYNK LIEFIKKEYW KRGYEEVISP NIYNMKLWEK SKDAASYKEN MFTFDIDKQD
101: FGLKSINGPG HCLMFEHRVR SCRELPIRLA EFGVLHRNEA SEALSGLTHT RRFQQDDAHI FCTKNQVKRE VKDVLDFVDY VYTKFGFTYE LKLLTRPEEN
201: TKDFQRWEEG ENDLVEALQE FGKPFTVNRG VGALCGPKID ITLSDAMKRK FQCASIQLDF QLPDHFKLRY SPSDEEKKEN VMIHSKVLGS EDKDKGVRPF
301: MIHRTVLGSF ERMLAILLDH YKGKWPFWIS PRQVIVCSSS NNENDLTWRV RRQIHEAGYH VDVDTTDRNI SEKVGEAEIV QYNYILVVGD EEVATRQVTA
401: LLRDSSCSDR SKVPMMSVDA LLDVFKLRIV KFL

Best Arabidopsis Sequence Match ( AT1G17960.1 )
(BLAST)

001: MANNHHPKDE AYLSSVIPKR IRLFEEIQAE QLEQLQSRPH DPIKITLLPD GIEKEGRRWE TSPMDIAVQI SKGLAKSALV SSVNHVLWDM NRPLEGDCSL
101: EIFGFDSDQG RNTFWHSSAH ILGQALEQEY GCKLCIGPCE PRDEGFYYDS LYYGELGLND NHFPNIEAKL PIRMAEFGVL HRNEDSGALG GMTRVRRFVQ
201: DDAHIFCRVD QVEEEVKGVL DFIDYVYRIF GFTYELTLST RPKDHIGDLE TWAKAENDLE KALDDFGKPW VIKEGDGAFY GPKIDITVSD ARNRKFQCAT
301: IQLDFQLPAC FKLKYLSEKN EMEAPVMIHS AVLGSIERMF AILLEHYKGI WPFWLSPRQA IVCSLSEDCS SYAKQVQKQI NEVGYYVDID ESDRSLRKKV
401: ADARDAPYNY ILVVGQKEVA TGQVTVRLRE DPEGRKDLPE MSIESLLDEF KFKTVNFL

Arabidopsis Description

Probable threonine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.