Factsheet for Solyc07g064750.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26830.1	Solyc03g113720.2.1	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G18130.1	Thale cress	cytosol	11.11	16.36
CDX81854	Canola	cytosol	28.4	15.94
TraesCS1B01G248400.1	Wheat	cytosol	38.27	15.76
CDY21726	Canola	cytosol	27.98	15.6
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	38.68	15.44
Solyc08g074550.2.1	Tomato	plastid	42.8	15.38
CDY19754	Canola	cytosol	38.27	15.27
Solyc05g005800.2.1	Tomato	plastid	44.03	14.76
VIT_19s0015g00470.t01	Wine grape	cytosol	41.15	14.58
VIT_01s0026g00340.t01	Wine grape	cytosol	40.74	14.43
Bra031009.1-P	Field mustard	cytosol	21.4	13.94
TraesCS1A01G235200.1	Wheat	cytosol	38.68	13.7
TraesCS3A01G067300.1	Wheat	mitochondrion	39.51	13.56
KRH69521	Soybean	endoplasmic reticulum, nucleus	39.51	13.52
TraesCS3B01G080400.1	Wheat	golgi, unclear	39.09	13.46
Bra036596.1-P	Field mustard	mitochondrion	39.09	13.44
TraesCS3D01G066900.1	Wheat	mitochondrion	39.09	13.42
AT5G26830.1	Thale cress	mitochondrion	39.09	13.4
KRH74628	Soybean	endoplasmic reticulum	39.51	13.39
CDX87030	Canola	mitochondrion, plastid	39.51	13.35
Zm00001d027762_P001	Maize	cytosol	11.93	13.3
Bra031021.1-P	Field mustard	cytosol	31.28	13.17
CDX80596	Canola	extracellular	38.68	13.17
Zm00001d032667_P005	Maize	mitochondrion	39.92	13.16
EER91117	Sorghum	mitochondrion	39.92	13.13
CDX88245	Canola	mitochondrion	38.68	13.09
Bra009922.1-P	Field mustard	mitochondrion	38.68	13.09
HORVU3Hr1G012410.6	Barley	mitochondrion	39.09	13.09
CDY21715	Canola	cytosol	32.92	12.74
Os08t0295300-01	Rice	golgi, plasma membrane	38.27	12.48
AT1G17960.1	Thale cress	cytosol	22.63	12.01
Zm00001d013607_P003	Maize	mitochondrion	39.92	11.86
HORVU1Hr1G057910.4	Barley	cytosol	18.93	11.56
Solyc07g048080.2.1	Tomato	nucleus	27.16	9.81
GSMUA_Achr1P18790_001	Banana	cytosol	2.88	2.56

Protein Annotations

KEGG:00970+6.1.1.3	Gene3D:3.30.930.10	Gene3D:3.40.50.800	MapMan:35.1	InterPro:Anticodon-bd_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036621	UniProt:K4CHF4	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SUPFAM:SSF52954	SUPFAM:SSF55681
EnsemblPlantsGene:Solyc07g064750.1	EnsemblPlants:Solyc07g064750.1.1	InterPro:Thr-tRNA-ligase_IIa	UniParc:UPI000276C82A	:	:

Description

No Description!

Coordinates

chr7:+:66771964..66772944

Molecular Weight (calculated)

28603.5 Da

IEP (calculated)

8.979

GRAVY (calculated)

-0.536

Length

243 amino acids

Sequence
(BLAST)

001: MGQENLEKLE EANKYEHREL NKKQELFYYD PMSMFVFEID DKSVDQFGLK PMNCPGHCIQ SQSSFLQRIT SRLADFEALH RNEAIVNTSQ TISPGRCSHL
101: LQRITDQGRS KRRSWISSLM CIPYLVSLML TSQIWKKAED ALAEALNEFG KPWEISKGDS FLWSENRYQC EKKLTMCNIE HYKGKWPFWL SPRQAIVFPV
201: SNKSQTYAFE IWKRLHDASI TKSMLMSVIK RLEKKVRETQ LLF

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.