Factsheet for Solyc07g048080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g068130.2.1
Solyc02g094140.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	Solyc02g068130.2.1	AT5G40930.1	21848659
AT2G04842.1	Solyc02g094140.2.1	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015710	Potato	mitochondrion, plastid	94.21	94.35
KRH17875	Soybean	mitochondrion	29.72	78.74
Bra013193.1-P	Field mustard	plastid	75.33	77.76
CDY50043	Canola	plastid	75.33	77.76
AT2G04842.1	Thale cress	plastid	74.89	77.54
KRG96128	Soybean	nucleus	75.04	77.45
CDX93065	Canola	plastid	75.48	77.09
VIT_12s0057g00400.t01	Wine grape	plastid	77.71	76.8
KXG36582	Sorghum	plastid	73.25	74.14
GSMUA_Achr4P01570_001	Banana	plastid	73.25	73.8
TraesCS6D01G262800.1	Wheat	plastid	72.36	73.01
TraesCS6B01G310700.1	Wheat	plastid	69.99	72.8
TraesCS6A01G282300.1	Wheat	plastid	72.07	72.71
Os02t0538000-01	Rice	plasma membrane	71.77	71.66
Zm00001d021962_P001	Maize	plastid	66.57	70.55
HORVU6Hr1G070790.5	Barley	plastid	72.36	70.27
Solyc08g074550.2.1	Tomato	plastid	35.81	35.65
Solyc05g005800.2.1	Tomato	plastid	36.4	33.79
Solyc07g064750.1.1	Tomato	cytosol	9.81	27.16

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006435	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR036621	UniProt:K4CF12	HAMAP:MF_00184
PFAM:PF00587	PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451
PANTHER:PTHR11451:SF44	SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	EnsemblPlantsGene:Solyc07g048080.2
EnsemblPlants:Solyc07g048080.2.1	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI000276B045
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:

Description

Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:Projected from Arabidopsis thaliana (AT2G04842) UniProtKB/Swiss-Prot;Acc:F4IFC5]

Coordinates

chr7:+:59267414..59274765

Molecular Weight (calculated)

77825.2 Da

IEP (calculated)

7.123

GRAVY (calculated)

-0.477

Length

673 amino acids

Sequence
(BLAST)

001: MKYVGALGKT MALSLSSRSL FTSSYKSISP LSRNPFSSFP IRQYRILFVL DPSNNNNNNK TNRNKLLRRR TSFSTHASTA LQEAPAPNEK MVLPTNESSD
101: GLLRIRHTCA HVMAMAVQKL YPNAKVTIGP WIDNGFYYDF DMEPLTDSDL KRIKKEMDRI ISRNLPLVRE EVSRDEAQRR IMSINEPYKI EILESIKEEP
201: ITIYHIGDEW WDLCAGPHVE TTGKINRKAI ELESVAGAYW RGDVKKPMLQ RIYGTAWENE DQLKAYLHFK EEAKRRDHRR IGQDLDLFSI QDEAGGGLVF
301: WHPKGAIIRH IIEDTWKKIH MERGYDLLYT PHVAKADLWK ISGHLDFYKE NMFDQMEIEE ELFQLRPMNC PYHVLIYKRQ LHSYRDFPIR VAELGTVYRY
401: ELSGSLHGLF RVRGFTQDDA HIFCLEDQIK DEIRGVLDLT EEILQQFGFD KYEVNLSTRP EKAVGDDEIW EKATFALKDA LEDKGWSYQI DDGGGAFYGP
501: KIDLKIEDAL GRKWQCSTIQ VDFNLPQRFD ITYVDSNQER KRPIMIHRAV LGSLERFFGV LIENYAGDFP LWLSPIQARV LPVTDAQLQY CNEVVKKLKA
601: SGIRVEVCSG ERLPKLIRNA EKQKIPLMAV VGPKEVETET ITVRSRFAGE LGNMSIDEFI SRTKTASDNR TFL

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.