Factsheet for PGSC0003DMT400015710

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400052223
PGSC0003DMT400056935
PGSC0003DMT400056939

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	PGSC0003DMT400052223	AT5G40930.1	21848659
AT2G04842.1	PGSC0003DMT400056935	AT5G40930.1	21848659
AT2G04842.1	PGSC0003DMT400056939	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g048080.2.1	Tomato	nucleus	94.35	94.21
KRH17875	Soybean	mitochondrion	29.61	78.35
CDY50043	Canola	plastid	75.15	77.45
Bra013193.1-P	Field mustard	plastid	75.0	77.3
KRG96128	Soybean	nucleus	74.85	77.15
AT2G04842.1	Thale cress	plastid	74.26	76.77
CDX93065	Canola	plastid	75.15	76.63
VIT_12s0057g00400.t01	Wine grape	plastid	77.23	76.21
KXG36582	Sorghum	plastid	72.77	73.53
GSMUA_Achr4P01570_001	Banana	plastid	73.07	73.5
TraesCS6D01G262800.1	Wheat	plastid	71.88	72.41
TraesCS6B01G310700.1	Wheat	plastid	69.49	72.18
TraesCS6A01G282300.1	Wheat	plastid	71.58	72.11
Os02t0538000-01	Rice	plasma membrane	71.13	70.92
Zm00001d021962_P001	Maize	plastid	66.22	70.08
HORVU6Hr1G070790.5	Barley	plastid	71.73	69.55
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	24.55	39.95
PGSC0003DMT400076047	Potato	cytosol	6.1	20.4

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006435	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR036621	UniProt:M1A6F4	HAMAP:MF_00184
PFAM:PF00587	PFAM:PF03129	PFAM:PF07973	EnsemblPlantsGene:PGSC0003DMG400006139	PGSC:PGSC0003DMG400006139	EnsemblPlants:PGSC0003DMT400015710
PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44	SMART:SM00863	SUPFAM:SSF52954
SUPFAM:SSF55186	SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core
UniParc:UPI000295A7B7	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:

Description

Threonyl-tRNA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400006139]

Coordinates

chr7:+:44639504..44646561

Molecular Weight (calculated)

77752.5 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.424

Length

672 amino acids

Sequence
(BLAST)

001: MKYVGALGKT MALSLSSRSL FTSSYKSLSP LKNPFSSFPI RQYRILFVLD PCKYNNKTTR YKLPRRRSSF STHASAALQE APAPNEKIVL PTNESSDGLL
101: RIRHTCAHVM AMAVQKLYPN AKVTIGPWID NGFYYDFDME PLTDRDLKRI KKEMDRIISR NLPLVREEVS REEAQRRIMS INEPYKIEIL ESIKEEPITI
201: YHIGDEWWDL CAGPHVETTG KINKKAIELE SVAGAYWRGD VKKPMLQRIY GTAWENEDQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQAA GGGLVFWHPK
301: GAIIRHIIED TWKKIHMERG YDLLYTPHVA KADLWKISGH LDFYKENMFD QMEIEEELFQ LRPMNCPYHV LIYKRQLHSY RDFPIRVAEL GTVYRYELSG
401: SLHGLFRVRG FTQDDAHIFC LEDQIKDEIR GVLDLTEEIL QQFGFDKYEV NLSTRPEKAV GDDEIWEKAT FALKDALEDK GWSYQIDDGG GAFYGPKIDL
501: KIEDALGRKW QCSTIQACFD LGLLFHWPVD FNLPQRFDIT YVDSNQERKR PIMIHRAVLG SLERFFGVLI ENYAGDFPLW LSPIQARVLP VTDAQKLKAS
601: GIRVEVCSGE RLPKLIRNAE KQKIPLMAVV GPKEVETETI TIRSRFAGEL GNMSIDEFIS RTKTASENRT FL

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.