Factsheet for TraesCS6D01G262800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G429800.1
TraesCS3B01G467700.1
TraesCS3D01G425100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	TraesCS3A01G429800.1	AT5G40930.1	21848659
AT2G04842.1	TraesCS3B01G467700.1	AT5G40930.1	21848659
AT2G04842.1	TraesCS3D01G425100.1	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G282300.1	Wheat	plastid	98.05	98.05
TraesCS6B01G310700.1	Wheat	plastid	92.2	95.05
HORVU6Hr1G070790.5	Barley	plastid	93.7	90.19
KXG36582	Sorghum	plastid	84.56	84.81
Os02t0538000-01	Rice	plasma membrane	83.96	83.09
Zm00001d021962_P001	Maize	plastid	77.36	81.26
Bra013193.1-P	Field mustard	plastid	74.66	76.38
CDY50043	Canola	plastid	74.36	76.07
KRH17875	Soybean	mitochondrion	28.79	75.59
AT2G04842.1	Thale cress	plastid	73.61	75.54
CDX93065	Canola	plastid	74.21	75.11
KRG96128	Soybean	nucleus	73.16	74.85
GSMUA_Achr4P01570_001	Banana	plastid	74.81	74.7
Solyc07g048080.2.1	Tomato	nucleus	73.01	72.36
VIT_12s0057g00400.t01	Wine grape	plastid	73.61	72.1
PGSC0003DMT400015710	Potato	mitochondrion, plastid	72.41	71.88
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	32.68	35.8
TraesCS3D01G066900.1	Wheat	mitochondrion	36.73	34.6

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418
GO:GO:0006435	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587
PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44
SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	EnsemblPlantsGene:TraesCS6D01G262800	EnsemblPlants:TraesCS6D01G262800.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II
TIGR:cd00771	TIGR:cd00860	SEG:seg	InterPro:tRNA_SAD	:	:

Description

No Description!

Coordinates

chr6D:+:371300139..371303767

Molecular Weight (calculated)

76176.9 Da

IEP (calculated)

6.557

GRAVY (calculated)

-0.499

Length

667 amino acids

Sequence
(BLAST)

001: MATLSAPLLR SHHRHLPVRS SPRRCRTAAF PRGFVPLEPL SSRGPPRTAV RSASTSAAAP EAAEATGGAA PSETAAEEVE AQARVVLPTN ESSENLLRIR
101: HTCAHVMAMA VQKLFPDSKV TIGPWIDNGF YYDFDMEPLT DKDLKKIKKE MDRIIRRNLP LVREEVSREE AQKRIQALNE PYKLEILERI KEEPITIYHI
201: GEEWWDLCAG PHVESTGKIQ RKAVELESVA GAYWRGDENN QMLQRIYGTA WESEDQLKAY IHFKEEAKRR DHRRLGQDLD LFSIQEDAGG GLVFWHPKGA
301: IIRHILEDSW KQTHLQRGYD LLYTPHVAKA DLWKISGHID FYKENMYNQM DVEDEPYQLR PMNCPYHILV YKRKLQSYRD LPIRVAELGT VYRYELSGAL
401: HGLFRVRGFT QDDAHIFCLE DQIKDEIRGV LDLTEEILGQ FGFRNYEVNL STRPEKSVGS DDIWEKATIA LKDALDDKGW GYTVDEGGGA FYGPKIDLKI
501: EDALGRKWQC STVQVDFNLP ERFDITYVDS HTEKKRPIMI HRAILGSLER FFGILIENYA GDFPLWLAPT QARILPVTNN ELQYCNEVAS ELKSRGIRAE
601: VCHGERLPKL IRNAETQKVP LMAVVGPKEV EARTLTIRSR HNGEMGTMPV DDFISKIQSA VAEKSSL

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.