Factsheet for Zm00001d021962_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012017_P002
Zm00001d040209_P001
Zm00001d042329_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	Zm00001d012017_P002	AT5G40930.1	21848659
AT2G04842.1	Zm00001d040209_P001	AT5G40930.1	21848659
AT2G04842.1	Zm00001d042329_P001	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36582	Sorghum	plastid	94.49	90.23
Os02t0538000-01	Rice	plasma membrane	82.36	77.6
TraesCS6D01G262800.1	Wheat	plastid	81.26	77.36
TraesCS6A01G282300.1	Wheat	plastid	81.1	77.21
TraesCS6B01G310700.1	Wheat	plastid	76.85	75.42
HORVU6Hr1G070790.5	Barley	plastid	79.84	73.16
GSMUA_Achr4P01570_001	Banana	plastid	73.07	69.46
Bra013193.1-P	Field mustard	plastid	70.71	68.86
CDY50043	Canola	plastid	70.71	68.86
AT2G04842.1	Thale cress	plastid	69.76	68.15
CDX93065	Canola	plastid	70.71	68.13
KRG96128	Soybean	nucleus	69.45	67.64
Solyc07g048080.2.1	Tomato	nucleus	70.55	66.57
VIT_12s0057g00400.t01	Wine grape	plastid	71.18	66.37
PGSC0003DMT400015710	Potato	mitochondrion, plastid	70.08	66.22
KRH17875	Soybean	mitochondrion	23.94	59.84
Zm00001d032667_P005	Maize	mitochondrion	33.39	28.77
Zm00001d027762_P001	Maize	cytosol	9.29	27.06
Zm00001d013607_P003	Maize	mitochondrion	33.39	25.92

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
UniProt:A0A1D6II54	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006435	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR036621
HAMAP:MF_00184	ProteinID:ONM59168.1	PFAM:PF00587	PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047
PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44	SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186
SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI000844E513
EnsemblPlantsGene:Zm00001d021962	EnsemblPlants:Zm00001d021962_P001	EnsemblPlants:Zm00001d021962_T001	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg
InterPro:tRNA_SAD	:	:	:	:	:

Description

Threonine--tRNA ligase chloroplastic/mitochondrial 2

Coordinates

chr7:+:167205352..167216520

Molecular Weight (calculated)

72403.3 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.446

Length

635 amino acids

Sequence
(BLAST)

001: MAAPSASAPL LRSHPHHGSL FPSSPRHRPA AASLSGFPPL RPASARRLPY TAVRSSSTAS PSAPVEDAPA AAAPTGDAEE ERVVLPTNES SERLLRIRHT
101: CAHVMAMAVQ KLFPNSKVTI GPWIENGFYY DFDMEPLTDK DLKKIKKEMD RIIRQNLPLV REEVSREEAQ KRIEALNEPY KLEILESIKE EPITIYHIGE
201: EWWDLCAGPH VESTGKIDRK AVELESVAGA YWREHGESEQ YLSPQYWNDS LCLDDAGGGL VFWHPKGAII RHILEDSWKQ IHLQHGYDLL YTPHVAKADL
301: WKISGHIDFY KDNMYNQMDV EDEMYQLRPM NCPYHILVYK RKLHSYRDFP IRVAELGTVY RYELSGSLHG LFRVRGFTQD DAHIFCLEDQ IKDEIRGVLD
401: LTEQILGQFG FRYYEINLST RPEKSVGTDD IWEKATIALK NALDDKGWEY KVDEGGGAFY GPKIDLKIED ALGRKWQCST VQVDFNLPER FDITYVDSNS
501: EKKRPIMIHR AILGSLERFF GVLIEHYAGD FPLWLAPTQT RILPVTDNEL QYCNEVASEL KSRGLRVEVC HGERLPKLIR NAETQKVPLM AVVGPKEVQA
601: RTLTIRSRHN GEIGTMPVDE FITRLQLAVA NKSSL

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.