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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01977

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G04842.1 EES01977 AT5G40930.1 21848659
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d021962_P001 Maize plastid 90.23 94.49
TraesCS6D01G262800.1 Wheat plastid 84.81 84.56
TraesCS6A01G282300.1 Wheat plastid 84.66 84.41
Os02t0538000-01 Rice plasma membrane 85.11 83.98
TraesCS6B01G310700.1 Wheat plastid 80.6 82.84
HORVU6Hr1G070790.5 Barley plastid 83.46 80.09
KRH17875 Soybean mitochondrion 29.17 76.38
CDY50043 Canola plastid 74.44 75.92
Bra013193.1-P Field mustard plastid 74.29 75.77
GSMUA_Achr4P01570_001 Banana plastid 76.09 75.75
CDX93065 Canola plastid 74.44 75.11
KRG96128 Soybean nucleus 73.38 74.85
AT2G04842.1 Thale cress plastid 72.93 74.62
VIT_12s0057g00400.t01 Wine grape plastid 75.19 73.42
Solyc07g048080.2.1 Tomato nucleus 74.14 73.25
PGSC0003DMT400015710 Potato mitochondrion, plastid 73.53 72.77
EER91117 Sorghum mitochondrion 35.19 31.66
Protein Annotations
KEGG:00970+6.1.1.3MapMan:17.2.19Gene3D:3.30.54.20Gene3D:3.30.930.10Gene3D:3.30.980.10Gene3D:3.40.50.800
UniProt:A0A1B6QF84InterPro:Anticodon-bdInterPro:Anticodon-bd_dom_sfGO:GO:0000003GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004812GO:GO:0004829GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0006139GO:GO:0006412
GO:GO:0006418GO:GO:0006435GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009790GO:GO:0009791GO:GO:0009793
GO:GO:0009987GO:GO:0019538GO:GO:0043039InterPro:IPR006195InterPro:IPR036621EnsemblPlants:KXG36582
ProteinID:KXG36582ProteinID:KXG36582.1HAMAP:MF_00184PFAM:PF00587PFAM:PF03129PFAM:PF07973
PRINTS:PR01047PFscan:PS50862PANTHER:PTHR11451PANTHER:PTHR11451:SF44SMART:SM00863EnsemblPlantsGene:SORBI_3002G356900
SUPFAM:SSF52954SUPFAM:SSF55186SUPFAM:SSF55681TIGRFAMs:TIGR00418InterPro:Thr-tRNA-ligase_IIaInterPro:Thr/Ala-tRNA-synth_IIc_edit
InterPro:ThrRS_coreUniParc:UPI00081ABC52InterPro:aa-tRNA-synt_IIbInterPro:aa-tRNA-synth_IISEG:segInterPro:tRNA_SAD
Description
hypothetical protein
Coordinates
chr2:+:71942798..71947685
Molecular Weight (calculated)
76251.9 Da
IEP (calculated)
6.553
GRAVY (calculated)
-0.503
Length
665 amino acids
Sequence
(BLAST)
001: MAAPSASAPL LRSHPHRGSL VPSSPRHRPA ATSLLEFPPR RPASSRRFPY TAVRSSSTAS PSAPVEEASA AAAPTGDEEE ERVVLPTNES SETLLRIRHT
101: CAHVMAMAVQ KLFPNSKVTI GPWIENGFYY DFDMEPLTDK DLKKIKKEMD RIIRQNLPLV REEVSREEAQ KRIEALNEPY KLEILESIKE EPITIYHIGE
201: EWWDLCAGPH VESTGKINRK AVELESVAGA YWRGDEKNQM LQRIYGTAWE NEDQLKAYIH FKEEAKRRDH RRLGQDLDLF SIQDDAGGGL VFWHPKGAII
301: RHILEDSWKQ IHLQHGYDLL YTPHVAKADL WKISGHIDFY KESMYNQMDV EDEMYQLRPM NCPYHILVYK RKLHSYRDFP IRVAELGTVY RYELSGSLHG
401: LFRVRGFTQD DAHIFCLEDQ IKDEIRGVLD LTEQILGQFG FRYYEINLST RPEKSVGTDD IWEKATIALK NALDDKGWEY KVDEGGGAFY GPKIDLKIED
501: ALGRKWQCST VQVDFNLPER FDITYVDSNS EKKRPIMIHR AILGSLERFF GVLIEHYAGD FPLWLAPTQA RILPVTDNEL QYCNEVASEL KSRGLRVEVC
601: HGERLPKLIR NAETQKVPLM AVVGPKEVQA RTLTIRSRHN GEIGTMPVDE FITRLQLAVA NKSSL
Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)
001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL
Arabidopsis Description
EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.