CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94268
KRH57705

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	KRG94268	AT5G40930.1	21848659
AT2G04842.1	KRH57705	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96128	Soybean	nucleus	86.61	33.74
GSMUA_Achr4P01570_001	Banana	plastid	79.53	30.24
Solyc07g048080.2.1	Tomato	nucleus	78.74	29.72
PGSC0003DMT400015710	Potato	mitochondrion, plastid	78.35	29.61
AT2G04842.1	Thale cress	plastid	75.59	29.54
VIT_12s0057g00400.t01	Wine grape	plastid	78.74	29.37
KXG36582	Sorghum	plastid	76.38	29.17
Bra013193.1-P	Field mustard	plastid	74.8	29.14
CDY50043	Canola	plastid	74.8	29.14
CDX93065	Canola	plastid	75.59	29.14
TraesCS6D01G262800.1	Wheat	plastid	75.59	28.79
TraesCS6A01G282300.1	Wheat	plastid	75.2	28.64
Os02t0538000-01	Rice	plasma membrane	75.59	28.49
HORVU6Hr1G070790.5	Barley	plastid	75.59	27.71
TraesCS6B01G310700.1	Wheat	plastid	68.11	26.74
Zm00001d021962_P001	Maize	plastid	59.84	23.94
KRH74628	Soybean	endoplasmic reticulum	38.98	13.81
KRH69521	Soybean	endoplasmic reticulum, nucleus	38.19	13.66

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.930.10	EMBL:ACUP02007857	EnsemblPlantsGene:GLYMA_13G023900	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR006195	UniProt:K7LYN7	EnsemblPlants:KRH17875	ProteinID:KRH17875	ProteinID:KRH17875.1
PFAM:PF00587	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44	SUPFAM:SSF55186
SUPFAM:SSF55681	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	UniParc:UPI000294FDB5	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II

Description

hypothetical protein

Coordinates

chr13:-:4167869..4178141

Molecular Weight (calculated)

30053.3 Da

IEP (calculated)

8.129

GRAVY (calculated)

-0.465

Length

254 amino acids

Sequence
(BLAST)

001: MNHTSWRFWK ALRRIPSPFI TSVMSGGTSV LERKPMLQRI YGTAWENEEQ LKAYLHFKEE AKRRDHRRLG QDLDLFSIQD DAGGGLVFWH PNGAMVRHII
101: EDFWKKIHMK RGYDLLYTPH VAKADLWKIS GHLDFCKENM YDQMSVEDEL HQLRPMNCPY HILVYKSKLH SYRDFPIRVA ELGTVYRYEL SGSLHGLFRV
201: RGFTQDDAHI FCLDDQIKDE IRGVLDLTEE ILLQFGFEKY EVNLSTRLVL KSMK

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.