Factsheet for Bra013193.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93065	Canola	plastid	97.7	96.66
AT2G04842.1	Thale cress	plastid	88.19	88.46
KRG96128	Soybean	nucleus	76.07	76.07
VIT_12s0057g00400.t01	Wine grape	plastid	79.14	75.77
Solyc07g048080.2.1	Tomato	nucleus	77.76	75.33
PGSC0003DMT400015710	Potato	mitochondrion, plastid	77.3	75.0
KRH17875	Soybean	mitochondrion	29.14	74.8
TraesCS6D01G262800.1	Wheat	plastid	76.38	74.66
GSMUA_Achr4P01570_001	Banana	plastid	76.23	74.4
TraesCS6A01G282300.1	Wheat	plastid	76.07	74.36
KXG36582	Sorghum	plastid	75.77	74.29
TraesCS6B01G310700.1	Wheat	plastid	73.47	74.03
Os02t0538000-01	Rice	plasma membrane	74.39	71.96
HORVU6Hr1G070790.5	Barley	plastid	75.46	71.0
Zm00001d021962_P001	Maize	plastid	68.86	70.71
Bra036596.1-P	Field mustard	mitochondrion	35.58	32.81
Bra009922.1-P	Field mustard	mitochondrion	36.04	32.73
Bra031021.1-P	Field mustard	cytosol	27.3	30.85
Bra031009.1-P	Field mustard	cytosol	17.48	30.56

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	EnsemblPlantsGene:Bra013193	EnsemblPlants:Bra013193.1	EnsemblPlants:Bra013193.1-P	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195
InterPro:IPR036621	UniProt:M4D9N3	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF03129	PFAM:PF07973
PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44	SMART:SM00863	SUPFAM:SSF52954
SUPFAM:SSF55186	SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core
UniParc:UPI000254090E	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:

Description

AT2G04842 (E=0.0) EMB2761 | EMB2761 (EMBRYO DEFECTIVE 2761); ATP binding / aminoacyl-tRNA ligase/ ligase, forming aminoacyl-tRNA and related compounds / nucleotide binding / threonine-tRNA ligase

Coordinates

chrA03:-:19951561..19954504

Molecular Weight (calculated)

74859.7 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.435

Length

652 amino acids

Sequence
(BLAST)

001: MASSRSLLLS SSFLSRPSSF TSSLRRFAYL PSPTPRFSPK RHGFSTVLSV ATEPAAISST APKKSEPATV PLPSNDSSDK LLKIRHTCAH VMAMAVQKLF
101: PDAKVTIGPW IDNGFYYDFD MEPLTDKDLK RIKKEMDRII SRNLPLLREE VSREEAQRRI MAINEPYKME ILESIKEEPI TVYHIGNEWW DLCAGPHVET
201: TGKINKKAVE LESVAAAYWR GDEKRQMLQR IYGTAWESEE QLKAYLHFKE EAKRRDHRRI GQDLDLFSIQ DEAGGGLVFW HPKGAIVRNI IEESWKKMHV
301: EHGYDLIYTP HVAKADLWRI SGHLDFYREN MYDQMEIEDE LYQLRPMNCP YHILLYQRKR QSYRDLPIRV AELGTVYRYE LSGSLHGLFR VRGFTQDDAH
401: IFCLEDQIKD EIRGVLDLTE EILSRFGFDK YEVNLSTRPE KSVGSDDIWE KATCALKDAL DDKGWSYEVD EGGGAFYGPK IDLKIEDALG RKWQCSTIQV
501: DFNLPQRFDI TYVDTNSDKK RPIMIHRAVL GSLERFFGVL IEHYAGDFPL WLSPVQVRVL PVTDNQLEFC KEVSKKLKAC GVRAELCHGE RLPKLIRNAE
601: TQKIPLMAVV GPKEVETGTV TVRSRFGGEL GTIPVDDFIN KINIAVETRT AL

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.