Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G429800.1 | |
| TraesCS3B01G467700.1 | |
| TraesCS3D01G425100.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04842.1 | TraesCS3A01G429800.1 | AT5G40930.1 | 21848659 |
| AT2G04842.1 | TraesCS3B01G467700.1 | AT5G40930.1 | 21848659 |
| AT2G04842.1 | TraesCS3D01G425100.1 | AT5G40930.1 | 21848659 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G282300.1 | Wheat | plastid | 95.67 | 92.8 |
| TraesCS6D01G262800.1 | Wheat | plastid | 95.05 | 92.2 |
| HORVU6Hr1G070790.5 | Barley | plastid | 94.44 | 88.17 |
| KXG36582 | Sorghum | plastid | 82.84 | 80.6 |
| Os02t0538000-01 | Rice | plasma membrane | 81.92 | 78.64 |
| Zm00001d021962_P001 | Maize | plastid | 75.42 | 76.85 |
| Bra013193.1-P | Field mustard | plastid | 74.03 | 73.47 |
| CDY50043 | Canola | plastid | 73.57 | 73.01 |
| AT2G04842.1 | Thale cress | plastid | 72.95 | 72.62 |
| CDX93065 | Canola | plastid | 73.57 | 72.23 |
| GSMUA_Achr4P01570_001 | Banana | plastid | 74.03 | 71.71 |
| KRG96128 | Soybean | nucleus | 72.18 | 71.63 |
| Solyc07g048080.2.1 | Tomato | nucleus | 72.8 | 69.99 |
| PGSC0003DMT400015710 | Potato | mitochondrion, plastid | 72.18 | 69.49 |
| VIT_12s0057g00400.t01 | Wine grape | plastid | 73.11 | 69.46 |
| KRH17875 | Soybean | mitochondrion | 26.74 | 68.11 |
| TraesCS1B01G248400.1 | Wheat | cytosol | 34.0 | 37.29 |
| TraesCS3B01G080400.1 | Wheat | golgi, unclear | 36.63 | 33.57 |
Protein Annotations
Description
No Description!
Coordinates
chr6B:+:556490258..556495581
Molecular Weight (calculated)
73630.9 Da
IEP (calculated)
6.863
GRAVY (calculated)
-0.471
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MATLSAPLLR SHHRHLPIRS SPRRCPTAAA FPRGFAPLEP LSSRAPSRTV VRSASTSAAA PEAAEASGGA APSETAAEVE VEARVVLPTN ESSENLLRIR
101: HTCAHVMAMA VQKLFPNSKV TIGPWIDNGF YYDFDMEPLT DKDLKKIKKE MDRIIRRNLP LVREEVSREE AQKRIQALNE PYKLEILERI KEEPITIYHI
201: GEEWWDLCAG PHVESTGKIQ RKAVELESVA GAYWRGDENN QMLQRIYGTA WESEDQLKAY IHFKEEAKRR DHRRLGQDLD LFSIQEDAGG GLVFWHPKGA
301: IIRHILEDSW KQTHLQRGYD LLYTPHVAKA DLWKISGHID FYKENMYNQM DKRKLQSYRD LPIRVAELGT VYRYELSGAL HGLFRVRGFT QDDAHIFCLE
401: DQIKDEIRGV LDLTEEILGQ FGFRNYEVNL STRPEKSVGS DDIWEKATIA LKDALDDKGW GYTVDEGGGA FYGPKIDLKI EDALGRKWQC STVQVDFNLP
501: ERFDITYVDS HTEKKRPIMI HRAILGSLER FFGILIENYA GDFPLWLAPT QARILPVTNN ELQYCNEVAS ELKSRGIRAE VCHGKRLPKL IRNAETQKVP
601: LMAVVGPKEV EARTLTIRSR HNGEMGTMLV DDFISKIQSA VADKSSL
101: HTCAHVMAMA VQKLFPNSKV TIGPWIDNGF YYDFDMEPLT DKDLKKIKKE MDRIIRRNLP LVREEVSREE AQKRIQALNE PYKLEILERI KEEPITIYHI
201: GEEWWDLCAG PHVESTGKIQ RKAVELESVA GAYWRGDENN QMLQRIYGTA WESEDQLKAY IHFKEEAKRR DHRRLGQDLD LFSIQEDAGG GLVFWHPKGA
301: IIRHILEDSW KQTHLQRGYD LLYTPHVAKA DLWKISGHID FYKENMYNQM DKRKLQSYRD LPIRVAELGT VYRYELSGAL HGLFRVRGFT QDDAHIFCLE
401: DQIKDEIRGV LDLTEEILGQ FGFRNYEVNL STRPEKSVGS DDIWEKATIA LKDALDDKGW GYTVDEGGGA FYGPKIDLKI EDALGRKWQC STVQVDFNLP
501: ERFDITYVDS HTEKKRPIMI HRAILGSLER FFGILIENYA GDFPLWLAPT QARILPVTNN ELQYCNEVAS ELKSRGIRAE VCHGKRLPKL IRNAETQKVP
601: LMAVVGPKEV EARTLTIRSR HNGEMGTMLV DDFISKIQSA VADKSSL
001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL
Arabidopsis Description
EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.