Factsheet for TraesCS1B01G248400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G057910.4	Barley	cytosol	55.08	81.66
TraesCS1A01G235200.1	Wheat	cytosol	91.36	78.57
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	78.98	76.52
GSMUA_Achr1P18800_001	Banana	cytosol	63.39	72.2
Zm00001d027762_P001	Maize	cytosol	24.24	65.6
TraesCS3B01G080400.1	Wheat	golgi, unclear	76.95	64.31
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	44.07	62.95
CDY19754	Canola	cytosol	64.75	62.73
Os08t0295300-01	Rice	golgi, plasma membrane	78.64	62.28
Zm00001d032667_P005	Maize	mitochondrion	76.44	61.19
VIT_01s0026g00340.t01	Wine grape	cytosol	71.02	61.08
Solyc08g074550.2.1	Tomato	plastid	69.49	60.65
VIT_19s0015g00470.t01	Wine grape	cytosol	70.17	60.35
EER91117	Sorghum	mitochondrion	75.42	60.22
KRH69521	Soybean	endoplasmic reticulum, nucleus	69.49	57.75
KRH74628	Soybean	endoplasmic reticulum	69.49	57.18
Solyc05g005800.2.1	Tomato	plastid	68.64	55.86
CDX80596	Canola	extracellular	66.27	54.76
Bra036596.1-P	Field mustard	mitochondrion	65.42	54.6
AT5G26830.1	Thale cress	mitochondrion	65.59	54.58
Zm00001d013607_P003	Maize	mitochondrion	75.59	54.52
CDX88245	Canola	mitochondrion	66.27	54.46
Bra009922.1-P	Field mustard	mitochondrion	66.27	54.46
CDX87030	Canola	mitochondrion, plastid	65.59	53.82
Bra031021.1-P	Field mustard	cytosol	49.49	50.61
CDY21715	Canola	cytosol	53.56	50.32
CDY21726	Canola	cytosol	36.95	50.0
CDX81854	Canola	cytosol	35.76	48.73
Bra031009.1-P	Field mustard	cytosol	30.51	48.26
AT1G17960.1	Thale cress	cytosol	37.46	48.25
AT1G18130.1	Thale cress	cytosol	13.05	46.67
PGSC0003DMT400076047	Potato	cytosol	13.05	38.31
Solyc07g064750.1.1	Tomato	cytosol	15.76	38.27
TraesCS6B01G310700.1	Wheat	plastid	37.29	34.0

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR036621
HAMAP:MF_00184	PFAM:PF00587	PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862
PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681
TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	EnsemblPlantsGene:TraesCS1B01G248400	EnsemblPlants:TraesCS1B01G248400.1
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00771	TIGR:cd00860	InterPro:tRNA_SAD	:

Description

No Description!

Coordinates

chr1B:+:439442019..439447915

Molecular Weight (calculated)

67842.2 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.384

Length

590 amino acids

Sequence
(BLAST)

001: MTRPLEDDCE LSLLTFDSKE GRDTLWHSSA HILGEALERV YGCKLCIGPC TTSGEGFYYD AYYDNNVTLN ASHFGRIEDR ARGAVAEKQP FQRIEVYRDE
101: AFEFFTENRF KVEIINELPE DKPITLYRCG PLVDLCRGPH ILNTSFVKAF ACLKASSSYW MGKADRESLQ RVHGISFPQS KLLKEYQHMM EEAATRDHRL
201: LGESQKLFFF DSLSPGSCFF LPHGKKIVNK LKAFLRQQYR DRGYQEVESP TVLKMKLWET SGHSVNYKKN MFAFEIDGEE FGLKPMNCPG HCIIFKHESR
301: SYRELPLRIA DFGVLHGNEA SGALSGLIRV RRFQQDDAHI FCRESQIKEE VKSVLEFINY VYGIFGFNYE LELSTRPEKY LGDIETWNKA EQQLAEALDE
401: FGKPWKINEG DGAFYGPKID IGVFDALKRK FQCATLQLDF ALPVRFELTY AAEEKAKHER PVIIHRAILG SVERMFAILL EHYCGKWPLW LSPRQAIVCS
501: ISSDSLEYAK QVHAKIHKAG FDVEINLADK TMDKKVCEAQ LAKFNYILGV GPKEVESEMV DVRVRDKPER SKMSVDDLIS LLRDEVAAYR

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.