Factsheet for GSMUA_Achr1P18800_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027762_P001	Maize	cytosol	32.63	77.52
TraesCS1B01G248400.1	Wheat	cytosol	72.2	63.39
TraesCS3D01G066900.1	Wheat	mitochondrion	81.08	59.32
TraesCS3B01G080400.1	Wheat	golgi, unclear	80.69	59.21
TraesCS3A01G067300.1	Wheat	mitochondrion	80.69	59.04
Os08t0295300-01	Rice	golgi, plasma membrane	83.59	58.12
HORVU3Hr1G012410.6	Barley	mitochondrion	80.89	57.71
Zm00001d032667_P005	Maize	mitochondrion	81.27	57.12
EER91117	Sorghum	mitochondrion	81.27	56.97
TraesCS1A01G235200.1	Wheat	cytosol	75.29	56.85
HORVU1Hr1G057910.4	Barley	cytosol	43.24	56.28
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	63.9	54.35
Zm00001d013607_P003	Maize	mitochondrion	80.89	51.22
GSMUA_Achr4P01570_001	Banana	plastid	40.54	31.44
GSMUA_Achr1P18790_001	Banana	cytosol	4.05	7.69

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd
InterPro:Anticodon-bd_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSMUA_Achr1G18800_001	EnsemblPlants:GSMUA_Achr1P18800_001
EnsemblPlants:GSMUA_Achr1T18800_001	InterPro:IPR006195	InterPro:IPR036621	UniProt:M0S138	HAMAP:MF_00184	PFAM:PF00587
PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46
SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI00029657C1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	InterPro:tRNA_SAD

Description

Threonyl-tRNA synthetase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G18800_001]

Coordinates

chr1:+:14045230..14059727

Molecular Weight (calculated)

60299.2 Da

IEP (calculated)

6.862

GRAVY (calculated)

-0.414

Length

518 amino acids

Sequence
(BLAST)

001: MIVDLLRIHS VCFPEKQPFE RIEVSREQAL EMFAENKFKV EIINELPEDK TITVYRCGPL VDLCRGPHIP NTSFVKAIAC LKASSSYWRG KSDRESLQRV
101: YGISFPDSKR LKEYLTQLEE AKKRDHRILG QNQELFFFHP LSPGSCFFLP HGTRIYNKLI EFLRVQYRDR GYQEVLSPNI YNMQLWETSG HAANYKDNMF
201: VFEIEKQEFG LKPMNCPGHC LMFEHRVRSY RELPLRLADF GVLHRNELSG ALTGLTRVRR FQQDDAHIFC RENQIKEEVK NVLDFISYTY GIFGFTFELE
301: LSTRPEKYLG DIETWDKAEA ALSEALNEFG RPWQINEGDG AFYGPKIDIG VFDALNRKFQ CATLQLDFQL PLRFKLSYSA EDEAKLERPV MIHRAILGSV
401: ERMFAILLEH YKGKWPFWLS PRQAIVCPVS EKSQSYAQQV HDKIHQAGYY VDADLTDRKI QKKVREAQLA QYNYILVVGE EEAKTGQVSV RVRDGSDHSV
501: MSLEALLEHF KEEVAAFH

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.