Factsheet for TraesCS1A01G235200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	81.49	91.79
TraesCS1B01G248400.1	Wheat	cytosol	78.57	91.36
HORVU1Hr1G057910.4	Barley	cytosol	52.77	90.95
GSMUA_Achr1P18800_001	Banana	cytosol	56.85	75.29
TraesCS3A01G067300.1	Wheat	mitochondrion	75.51	73.16
Os08t0295300-01	Rice	golgi, plasma membrane	78.28	72.08
Zm00001d032667_P005	Maize	mitochondrion	75.36	70.15
VIT_01s0026g00340.t01	Wine grape	cytosol	69.53	69.53
VIT_19s0015g00470.t01	Wine grape	cytosol	69.39	69.39
Solyc08g074550.2.1	Tomato	plastid	67.93	68.93
EER91117	Sorghum	mitochondrion	73.76	68.47
CDY19754	Canola	cytosol	59.91	67.49
KRH69521	Soybean	endoplasmic reticulum, nucleus	69.24	66.9
Zm00001d027762_P001	Maize	cytosol	20.99	66.06
KRH74628	Soybean	endoplasmic reticulum	68.95	65.97
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	38.78	64.41
Solyc05g005800.2.1	Tomato	plastid	67.49	63.86
Bra009922.1-P	Field mustard	mitochondrion	66.03	63.09
CDX88245	Canola	mitochondrion	66.03	63.09
Bra036596.1-P	Field mustard	mitochondrion	64.87	62.94
CDX80596	Canola	extracellular	65.16	62.6
Zm00001d013607_P003	Maize	mitochondrion	73.91	61.98
AT5G26830.1	Thale cress	mitochondrion	63.99	61.92
CDX87030	Canola	mitochondrion, plastid	64.43	61.47
PGSC0003DMT400076047	Potato	cytosol	17.78	60.7
Bra031021.1-P	Field mustard	cytosol	50.15	59.62
CDY21715	Canola	cytosol	53.79	58.76
AT1G17960.1	Thale cress	cytosol	38.92	58.3
CDY21726	Canola	cytosol	33.53	52.75
CDX81854	Canola	cytosol	32.65	51.73
Bra031009.1-P	Field mustard	cytosol	27.99	51.47
AT1G18130.1	Thale cress	cytosol	12.1	50.3
Solyc07g064750.1.1	Tomato	cytosol	13.7	38.68
TraesCS6A01G282300.1	Wheat	plastid	35.28	36.28

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039
InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824
PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46
SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS
InterPro:TGS-like	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	EnsemblPlantsGene:TraesCS1A01G235200
EnsemblPlants:TraesCS1A01G235200.1	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	TIGR:cd00771	TIGR:cd00860	TIGR:cd01667
SEG:seg	InterPro:tRNA_SAD	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:415635016..415641273

Molecular Weight (calculated)

78381.7 Da

IEP (calculated)

6.673

GRAVY (calculated)

-0.403

Length

686 amino acids

Sequence
(BLAST)

001: MGAKDKAQAP PPAAVPDQAY LEAVTGKRDR LFEQILDRQA RRHAENGGSP IKITLHDGTV QEGKKWMSTP MDIAKEISSG LAARCLIAQV NGGLWDMTRP
101: LEDDCQLNLL TFDSKEGRDT LWHSSAHILG EALERVYGCK LCIGPCTTRG EGFYYDAYYD NNVTLNGSHF GHIEDRARRA VAEKQPFQRI EVSRDEALEF
201: FAENKFKVEI INELPEHKPI TLHKCGPLVD LCRGPHIPNT SFVKAFACLK ASSSYWRGKA DRESLQRVYG ISFPDAKLLK EYQRMMEEAA RRDHRLLGES
301: QKLFFFDSLS PGSCFFLPHG TKIVNKLKAF LRQQYRDRGY QEVESPNVLK MKLWETSGHS ANYKENMFLF EIDGEEFGLK PMNCPGHCII FKHETRSYKE
401: LPLRIADFGV LHRNEASGAL SGLTRVRRFQ QDDAHIFCRE SQIKEEVKSV LEFINYVYGI FGFNYELELS TRPEKYLGDI ETWNKAEQQL AEALDEFGKP
501: WEINEGDGAF YGPKIDIGVF DALKRKFQCA TLQLDFALPV RFKLTYAAEE EAKLERPVII HRAILGSVER MFAILLEHYC GKWPLWLSPR QAIVCSISSD
601: SLEYAKQVHA KIHNAGYDVE IDMTDKKIQK KVCVAQLAQF NYILAVGPTE VESEMVSVRL RDKPEFFPMS VDDLISLFRD EVAAYR

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.