CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26830.1	CDY21807	AT3G48100.1	18642946
AT5G26830.1	CDY36905	AT3G48100.1	18642946
AT5G26830.1	CDY54257	AT3G48100.1	18642946
AT5G26830.1	CDY59856	AT3G48100.1	18642946
AT5G26830.1	CDY68129	AT3G48100.1	18642946
AT5G26830.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19754	Canola	cytosol	81.78	96.55
CDX80596	Canola	extracellular	89.71	90.34
CDX88245	Canola	mitochondrion	87.07	87.19
AT5G26830.1	Thale cress	mitochondrion	84.7	85.9
VIT_19s0015g00470.t01	Wine grape	cytosol	72.88	76.38
VIT_01s0026g00340.t01	Wine grape	cytosol	72.88	76.38
KRH69521	Soybean	endoplasmic reticulum, nucleus	72.18	73.1
KRH74628	Soybean	endoplasmic reticulum	71.77	71.97
CDY21715	Canola	cytosol	61.75	70.7
Zm00001d027762_P001	Maize	cytosol	20.58	67.89
HORVU1Hr1G057910.4	Barley	cytosol	37.27	67.34
TraesCS3B01G080400.1	Wheat	golgi, unclear	65.09	66.29
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	37.97	66.1
TraesCS3D01G066900.1	Wheat	mitochondrion	64.95	65.96
TraesCS3A01G067300.1	Wheat	mitochondrion	64.67	65.68
TraesCS1B01G248400.1	Wheat	cytosol	53.82	65.59
HORVU3Hr1G012410.6	Barley	mitochondrion	65.79	65.15
Os08t0295300-01	Rice	golgi, plasma membrane	66.9	64.56
TraesCS1A01G235200.1	Wheat	cytosol	61.47	64.43
Zm00001d032667_P005	Maize	mitochondrion	65.23	63.64
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	53.82	63.55
EER91117	Sorghum	mitochondrion	64.67	62.92
CDY21726	Canola	cytosol	36.72	60.55
CDX81854	Canola	cytosol	36.3	60.28
Zm00001d013607_P003	Maize	mitochondrion	64.53	56.72
GSMUA_Achr1P18790_001	Banana	cytosol	18.36	48.35
Solyc07g064750.1.1	Tomato	cytosol	13.35	39.51
CDY50043	Canola	plastid	32.55	35.89
CDX93065	Canola	plastid	32.41	35.36

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
GO:A0A078DCW9	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX87030	ProteinID:CDX87030
ProteinID:CDX87030.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812
GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSBRNA2T00145910001
InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824
PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46
SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS
InterPro:TGS-like	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI0004EE5A0C
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:

Description

BnaC09g03450D

Coordinates

chrLK031849:-:76850..81098

Molecular Weight (calculated)

82376.3 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.468

Length

719 amino acids

Sequence
(BLAST)

001: MLLRLSARSI RRYTSSHSSL SASSSSSFCT LPPMSTSHPK NESYLSAVIP KRIKLFEQIQ SHQLEKLKSL PHDPIKITLP DGTVKEGRKW ETTPMDIAGE
101: ISKGLANAAL ISSVNDELWD MSRPLEGDCK LELFKFDSDK GRDTLWHSSA HVLGQALEQE YGCQLCIGPC TTRGEGFYYD AFYGDLGLND NHFPNIEAGA
201: AKAAKEAQPF ERVEVTKDQA IEMFSDNNFK VEIINDLPAD KTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWR GSKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFGH PLSPGSWFFL PLGTRVYNKL MEFIKEQYWK RGYTAGIAKL TLHWQVITPN MYNMNLWETS GHAANYKENM
401: FTFDIEKQEF GLKPMNCPGH CLMFQHRVRS YRELPIRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTEDQVTDEV KAVLEFIDYA YKIFGFTYEL
501: KLSTRPEKYL GDLATWDKAE NDLKIALDAF GKKWVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPDRFKLEYS ADDEAKRQRP VMIHRAVLGS
601: VERMFAILLE HYKGKWPFWL SPRQAIVCPI SKKSEEYALQ VKKQIHEAGY YVDADITDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRIRDSAAHS
701: VKSIENLLEE FKTKTSEYQ

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.