CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 29364282

msms PMID: 29364282 doi

S Pahlow, A Ostendorp, L Krüßel, J Kehr

Molecular Plant Genetics, Universität Hamburg., Molecular Plant Genetics, Universität Hamburg; julia.kehr@uni-hamburg.de.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY21807
CDY36905
CDY54257
CDY59856
CDY68129
CDY70164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26830.1	CDY21807	AT3G48100.1	18642946
AT5G26830.1	CDY36905	AT3G48100.1	18642946
AT5G26830.1	CDY54257	AT3G48100.1	18642946
AT5G26830.1	CDY59856	AT3G48100.1	18642946
AT5G26830.1	CDY68129	AT3G48100.1	18642946
AT5G26830.1	CDY70164	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19754	Canola	cytosol	79.69	93.43
CDX88245	Canola	mitochondrion	93.42	92.9
CDX87030	Canola	mitochondrion, plastid	90.34	89.71
AT5G26830.1	Thale cress	mitochondrion	83.33	83.92
VIT_01s0026g00340.t01	Wine grape	cytosol	72.83	75.8
VIT_19s0015g00470.t01	Wine grape	cytosol	72.41	75.36
KRH69521	Soybean	endoplasmic reticulum, nucleus	73.11	73.52
KRH74628	Soybean	endoplasmic reticulum	72.69	72.38
CDY21715	Canola	cytosol	62.89	71.5
Zm00001d027762_P001	Maize	cytosol	20.59	67.43
HORVU1Hr1G057910.4	Barley	cytosol	37.53	67.34
TraesCS3D01G066900.1	Wheat	mitochondrion	66.11	66.67
TraesCS3B01G080400.1	Wheat	golgi, unclear	65.83	66.57
TraesCS3A01G067300.1	Wheat	mitochondrion	65.97	66.53
TraesCS1B01G248400.1	Wheat	cytosol	54.76	66.27
Os08t0295300-01	Rice	golgi, plasma membrane	68.63	65.77
HORVU3Hr1G012410.6	Barley	mitochondrion	66.81	65.7
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	37.96	65.62
TraesCS1A01G235200.1	Wheat	cytosol	62.6	65.16
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	54.9	64.37
Zm00001d032667_P005	Maize	mitochondrion	65.83	63.77
EER91117	Sorghum	mitochondrion	65.83	63.6
CDY21726	Canola	cytosol	37.11	60.78
CDX81854	Canola	cytosol	36.69	60.51
Zm00001d013607_P003	Maize	mitochondrion	65.69	57.34
GSMUA_Achr1P18790_001	Banana	cytosol	18.63	48.72
Solyc07g064750.1.1	Tomato	cytosol	13.17	38.68
CDY50043	Canola	plastid	32.91	36.04
CDX93065	Canola	plastid	32.77	35.51

Protein Annotations

KEGG:00970+6.1.1.3	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10	Gene3D:3.40.50.800
GO:A0A078CTW9	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX80596	ProteinID:CDX80596
ProteinID:CDX80596.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043039	EnsemblPlantsGene:GSBRNA2T00133724001	InterPro:IPR006195
InterPro:IPR012675	InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129
PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863
SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like
TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI0004EE3CA7	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:	:

Description

BnaC07g28480D

Coordinates

chrLK031821:+:1570629..1574894

Molecular Weight (calculated)

81975.8 Da

IEP (calculated)

7.549

GRAVY (calculated)

-0.491

Length

714 amino acids

Sequence
(BLAST)

001: MLLRLSARSI RRFTASHSVS PPPSRLASLS SFRTVPSMAA SNQKNEAYLS AVIPKRITLF EQIQADQLEK LKSLPHDPIK ITLPDGSVKE GKKWETTPMD
101: IAAQISKGLA NSALISSVND ELWDMSRPLE GDCKLELFKF DSDKGRDTLW HSSAHILGQA IEQEYGCKLC IGPCTTRGEG FYYDARYEND LGLNDNHFPN
201: IEAGAAKAAK EAQPFERIEV TKDQAMEMFS DNKFKIEIIK DLPADKTITV YRCGPLVDLC RGPHIPNTSF VKAFKCLRAS SAYWRGDKER ESLQRVYGIS
301: YPDQKQLKKY LQFLEEAKKY DHRLLGQKQE LFFCHHLSPG SWFFLPLGTR VYNKLMEFIK EQYWKRGYTE VITPNMYNMN LWETSGHAAN YKENMFTFDI
401: EKQEFGLKPM NCPGHCLMFQ HRVRSYRELP IRLADFGVLH RNEASGALSG LTRVRRFQQD DAHIFCTEDQ VTEEVKAVLE FIDYAYKIFG FTYELKLSTR
501: PEKYLGDLAT WDKAENDLKV ALDAFGKTWQ LNEGDGAFYG PKIDITVSDA LNRKFQCATL QLDFQLPDRF KLEYSGDDEA KRNRPVMIHR AVLGSVERMF
601: AILLEHYKGK WPFWLSPRQA IVCPISKKSE EYALKVKEQI HEAGYYVDAD ITDRKIDKKV REAQLAQYNY ILVVGETEAA TGQVSVRIRD SAAHSVKSID
701: DLLEEFKTKT AEYQ

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.