Factsheet for Zm00001d032667_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0295300-01	Rice	golgi, plasma membrane	85.62	84.7
Zm00001d013607_P003	Maize	mitochondrion	93.35	84.11
Zm00001d027762_P001	Maize	cytosol	24.83	83.94
TraesCS3B01G080400.1	Wheat	golgi, unclear	78.97	82.44
TraesCS3D01G066900.1	Wheat	mitochondrion	78.56	81.78
TraesCS3A01G067300.1	Wheat	mitochondrion	78.15	81.36
GSMUA_Achr1P18800_001	Banana	cytosol	57.12	81.27
HORVU3Hr1G012410.6	Barley	mitochondrion	77.88	79.06
HORVU1Hr1G057910.4	Barley	cytosol	41.52	76.88
TraesCS1B01G248400.1	Wheat	cytosol	61.19	76.44
TraesCS1A01G235200.1	Wheat	cytosol	70.15	75.36
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	61.87	74.88
VIT_01s0026g00340.t01	Wine grape	cytosol	69.2	74.34
VIT_19s0015g00470.t01	Wine grape	cytosol	69.06	74.2
Solyc08g074550.2.1	Tomato	plastid	67.71	73.82
KRH69521	Soybean	endoplasmic reticulum, nucleus	68.66	71.27
CDY19754	Canola	cytosol	58.75	71.1
KRH74628	Soybean	endoplasmic reticulum	68.39	70.29
Solyc05g005800.2.1	Tomato	plastid	68.79	69.93
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	38.26	68.28
CDX88245	Canola	mitochondrion	65.26	66.99
Bra009922.1-P	Field mustard	mitochondrion	65.26	66.99
Bra036596.1-P	Field mustard	mitochondrion	63.77	66.48
AT5G26830.1	Thale cress	mitochondrion	63.37	65.87
CDX80596	Canola	extracellular	63.77	65.83
CDX87030	Canola	mitochondrion, plastid	63.64	65.23
PGSC0003DMT400076047	Potato	cytosol	17.5	64.18
Bra031021.1-P	Field mustard	cytosol	49.39	63.08
CDY21715	Canola	cytosol	53.05	62.26
AT1G17960.1	Thale cress	cytosol	37.72	60.7
Bra031009.1-P	Field mustard	cytosol	28.36	56.03
CDY21726	Canola	cytosol	32.97	55.73
CDX81854	Canola	cytosol	32.7	55.66
AT1G18130.1	Thale cress	cytosol	11.94	53.33
Solyc07g064750.1.1	Tomato	cytosol	13.16	39.92
Zm00001d021962_P001	Maize	plastid	28.77	33.39

Protein Annotations

KEGG:00970+6.1.1.3	EntrezGene:103643444	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.30.980.10
Gene3D:3.40.50.800	UniProt:A0A1D6KSQ7	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR012675	InterPro:IPR036621
HAMAP:MF_00184	ProteinID:ONM05684.1	ProteinID:ONM05688.1	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129
PFAM:PF07973	PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863
SUPFAM:SSF52954	SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like
TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI0004DE8A91	EnsemblPlantsGene:Zm00001d032667
EnsemblPlants:Zm00001d032667_P005	EnsemblPlants:Zm00001d032667_T005	InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD

Description

Threonine--tRNA ligase mitochondrial 1

Coordinates

chr1:-:233705750..233715959

Molecular Weight (calculated)

84472.4 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.377

Length

737 amino acids

Sequence
(BLAST)

001: MQVCLRRGLS LVRQHTSRVL PPLSLHPTRF FLHQSASDPM GEGSVPGKDA KGKGKAKHPA QASALVARDD SYLEAVTHKR IRLFEEIQAR QAVERLNIGG
101: EVIKITLPDG AIKEGKKWIT TPMDIAKEIS SGFAASCLIA QVDETLWDMG RPLEGDCKLQ MFKFDTNEGR DTFWHSSAHI LGESLERAYG CKLCIGPCTT
201: RGEGFYYDAY YNELTLNEEH FGVIENQAKK AVAEKQPFER IEVSRAEALE MFAENKFKVE IINELPEDKT ITVYRCGPLV DLCRGPHIPN TSFVKAFACL
301: KASSSYWRGK ADRESLQRVY GISFPDSRRL TEYKHFLEEA KKRDHRILGK SQELFFFHEL SPGSCFFLPH GARIYNKLMN FMRKQYRDRG YQEVLSPNIY
401: NMQLWETSGH AANYKENMFV FEIEKQEFGL KPMNCPGHCL MFANRVRSYR ELPLRMADFG VLHRNELSGA LTGLTRVRRF QQDDAHIFCR EDQIKDEVKA
501: VLEFINYVYE IFGFKYELEL STRPEKYLGE IETWNKAEQQ LTEALNEFGK PWKINEGDGA FYGPKIDIGV FDALKRKFQC ATLQLDFQLP IRFKLTYSAE
601: DEAKIERPVM IHRAILGSVE RMFAILLEHY NGKWPLWLSP RQAIVCSVSS GSVEYAKQVL AMLHEADFHV DIDVSDRTIQ KKVREAQVAQ FNYILVVGAQ
701: EAETGNVCVR VRDNADLATM SVDGLITRLR EEIVAFK

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.