Factsheet for PGSC0003DMT400076047

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18790_001	Banana	cytosol	53.23	39.19
HORVU1Hr1G057910.4	Barley	cytosol	46.77	23.62
TraesCS3A01G067300.1	Wheat	mitochondrion	63.68	18.08
TraesCS3D01G066900.1	Wheat	mitochondrion	63.68	18.08
TraesCS3B01G080400.1	Wheat	golgi, unclear	63.18	17.99
TraesCS1A01G235200.1	Wheat	cytosol	60.7	17.78
HORVU3Hr1G012410.6	Barley	mitochondrion	64.18	17.77
Os08t0295300-01	Rice	golgi, plasma membrane	65.67	17.72
Zm00001d032667_P005	Maize	mitochondrion	64.18	17.5
EER91117	Sorghum	mitochondrion	64.18	17.46
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	48.76	16.09
Zm00001d013607_P003	Maize	mitochondrion	62.69	15.4
TraesCS1B01G248400.1	Wheat	cytosol	38.31	13.05
PGSC0003DMT400015710	Potato	mitochondrion, plastid	20.4	6.1
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	0.0	0.0
Zm00001d027762_P001	Maize	cytosol	0.0	0.0

Protein Annotations

KEGG:00970+6.1.1.3	Gene3D:3.10.20.30	Gene3D:3.30.980.10	MapMan:50.6.1	InterPro:Beta-grasp_dom_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR012675
UniProt:M1CW40	PFAM:PF02824	EnsemblPlantsGene:PGSC0003DMG400029571	PGSC:PGSC0003DMG400029571	EnsemblPlants:PGSC0003DMT400076047	PANTHER:PTHR11451
PANTHER:PTHR11451:SF46	SUPFAM:SSF55186	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	UniParc:UPI0002965E1D	SEG:seg	:	:	:

Description

Threonyl-tRNA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400029571]

Coordinates

chr8:+:45401942..45407065

Molecular Weight (calculated)

22845.3 Da

IEP (calculated)

5.796

GRAVY (calculated)

-0.397

Length

201 amino acids

Sequence
(BLAST)

001: MGTAYPRDEN YLEIVVPRRI ALFVSIQNQQ RLQRLSLSPD PIKIELPNGT VKEGKKWNTT PLDIAKEISK SLGSNALIAK VNGVLWDLLR PLESDCKLEL
101: FTFDSDEGRD TFWHSSAHIL GESLERKYGC KLCIGPCTTR GEGFYYDAFY GDLGLNEDHF KGIEAEAAKA VLEKQPFERI EVSRQQALDM FSDNRFKVKL
201: L

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.