Factsheet for Zm00001d013607_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91117	Sorghum	mitochondrion	86.31	95.53
Zm00001d032667_P005	Maize	mitochondrion	84.11	93.35
Zm00001d027762_P001	Maize	cytosol	22.86	85.78
Os08t0295300-01	Rice	golgi, plasma membrane	76.28	83.76
TraesCS3B01G080400.1	Wheat	golgi, unclear	70.9	82.15
TraesCS3D01G066900.1	Wheat	mitochondrion	70.54	81.5
TraesCS3A01G067300.1	Wheat	mitochondrion	70.17	81.07
GSMUA_Achr1P18800_001	Banana	cytosol	51.22	80.89
HORVU3Hr1G012410.6	Barley	mitochondrion	69.44	78.24
HORVU1Hr1G057910.4	Barley	cytosol	36.92	75.88
TraesCS1B01G248400.1	Wheat	cytosol	54.52	75.59
TraesCS1A01G235200.1	Wheat	cytosol	61.98	73.91
TraesCS1D01G236900.1	Wheat	cytosol, mitochondrion	54.89	73.73
VIT_01s0026g00340.t01	Wine grape	cytosol	61.74	73.62
VIT_19s0015g00470.t01	Wine grape	cytosol	61.49	73.32
Solyc08g074550.2.1	Tomato	plastid	60.15	72.78
CDY19754	Canola	cytosol	52.81	70.94
KRH69521	Soybean	endoplasmic reticulum, nucleus	60.88	70.14
KRH74628	Soybean	endoplasmic reticulum	61.0	69.6
Solyc05g005800.2.1	Tomato	plastid	61.49	69.38
PGSC0003DMT400097200	Potato	cytosol, mitochondrion	34.11	67.55
Bra009922.1-P	Field mustard	mitochondrion	58.56	66.71
CDX88245	Canola	mitochondrion	58.56	66.71
Bra036596.1-P	Field mustard	mitochondrion	57.09	66.05
CDX80596	Canola	extracellular	57.34	65.69
AT5G26830.1	Thale cress	mitochondrion	56.85	65.59
CDX87030	Canola	mitochondrion, plastid	56.72	64.53
Bra031021.1-P	Field mustard	cytosol	44.25	62.74
PGSC0003DMT400076047	Potato	cytosol	15.4	62.69
CDY21715	Canola	cytosol	47.55	61.94
AT1G17960.1	Thale cress	cytosol	32.89	58.73
Bra031009.1-P	Field mustard	cytosol	25.18	55.23
CDY21726	Canola	cytosol	29.34	55.05
CDX81854	Canola	cytosol	29.1	54.97
AT1G18130.1	Thale cress	cytosol	10.39	51.52
Solyc07g064750.1.1	Tomato	cytosol	11.86	39.92
Zm00001d021962_P001	Maize	plastid	25.92	33.39

Protein Annotations

KEGG:00970+6.1.1.3	EntrezGene:103626016	MapMan:17.2.19	Gene3D:3.10.20.30	Gene3D:3.30.930.10	Gene3D:3.40.50.800
UniProt:A0A1D6GKX7	ProteinID:AQK63979.1	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	InterPro:Beta-grasp_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004812	GO:GO:0004829	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016874	GO:GO:0019538	GO:GO:0043039	InterPro:IPR006195	InterPro:IPR012675
InterPro:IPR036621	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF02824	PFAM:PF03129	PFAM:PF07973
PRINTS:PR01047	PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF46	SMART:SM00863	SUPFAM:SSF52954
SUPFAM:SSF55186	SUPFAM:SSF55681	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI00084399BA	EnsemblPlantsGene:Zm00001d013607	EnsemblPlants:Zm00001d013607_P003	EnsemblPlants:Zm00001d013607_T003
InterPro:aa-tRNA-synt_IIb	InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:

Description

Threonine--tRNA ligase mitochondrial 1

Coordinates

chr5:+:15269240..15277925

Molecular Weight (calculated)

93637.4 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.270

Length

818 amino acids

Sequence
(BLAST)

001: MLVFLRRGLL LVRQPTTRVL AKPSLRPACL FVHHFAVDTM GEGSAAGKDA KGKGKGKTKA AAADSALVVR DDSYLEAVTQ KRIRFFEEIQ ARQAVERLNI
101: GGEVIKVTLP DGAIKEGKKW ITTPMDIAKE ISSGFAASCL IAQVDETLWD MGRPLEGDCK LQMFKFDTNE GRDTFWHSSA HILGESIERA YGCKLCIGPC
201: TTRGEGFYYD AYYNDQTLNE EHFGIIENQA KKAVAEKQPF ERIEVSRAEA LEMFAENEFK ATFLATVLFV SFLYHFAAYV KYIYDFHPFL QKSELYVQVE
301: IINELPEDKT ITVYRCGPLV DLCRGPHIPN TSFVKAFACL KASSSYWRGK VDRESLQRVY GISFPDSRRL TEYKHFLEEA KKRDHRILGK AQELFFFHEL
401: SPGSCFFLPH GARIYNKLMD FMRQQYRDRG YQEVLSPNIY NMQLWETSGH AANYKENMFV FEIEKQEFGL KPMNCPGHCL MFANRVRSYR ELPLRMADFG
501: VLHRNELSGA LTGLTRVRRF QQDDAHIFCR EDQIKDEVKA VLEFINYVYE IFGFKYELEL STRPEKYLGE VETWNKAEQQ LTEALNEFGK PWKDFEGLFG
601: SVLTGAAWPR LRSQHCFPMT LSCIERTYID AFTQINEGDG AFYGPKIDIG VFDALKRKFQ CATLQLDFQL PIRFKLAYSA EDEAKIERPV MIHRAILGSV
701: ERMLAILLEH YNGKWPLWLS PRQAIVCSVS SGSVEYAKQV LATLHEAGFH VDIDASDRTI QKKVREAQLA QFNYILVVGA QEAETGNICV RVRDNADLVT
801: TSVDGFITRL REEIAAFK

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.