Factsheet for GSMUA_Achr1P18790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076047	Potato	cytosol	39.19	53.23
AT1G17960.1	Thale cress	cytosol	39.19	23.36
VIT_19s0015g00470.t01	Wine grape	cytosol	50.18	19.97
VIT_01s0026g00340.t01	Wine grape	cytosol	49.45	19.68
Solyc08g074550.2.1	Tomato	plastid	46.52	18.79
Solyc05g005800.2.1	Tomato	plastid	49.82	18.76
KRH69521	Soybean	endoplasmic reticulum, nucleus	48.72	18.73
CDX80596	Canola	extracellular	48.72	18.63
KRH74628	Soybean	endoplasmic reticulum	48.72	18.55
CDX87030	Canola	mitochondrion, plastid	48.35	18.36
AT5G26830.1	Thale cress	mitochondrion	46.52	17.91
Bra009922.1-P	Field mustard	mitochondrion	46.52	17.69
CDX88245	Canola	mitochondrion	46.52	17.69
Bra036596.1-P	Field mustard	mitochondrion	45.79	17.68
Bra031021.1-P	Field mustard	cytosol	37.36	17.68
CDY21715	Canola	cytosol	38.83	16.88
CDY19754	Canola	cytosol	35.16	15.76
GSMUA_Achr4P01570_001	Banana	plastid	14.29	5.84
Bra031009.1-P	Field mustard	cytosol	6.96	5.09
CDY21726	Canola	cytosol	7.69	4.82
CDX81854	Canola	cytosol	7.33	4.62
AT1G18130.1	Thale cress	cytosol	2.56	4.24
GSMUA_Achr1P18800_001	Banana	cytosol	7.69	4.05
Solyc07g064750.1.1	Tomato	cytosol	2.56	2.88

Protein Annotations

KEGG:00970+6.1.1.3	Gene3D:3.10.20.30	Gene3D:3.30.980.10	MapMan:50.6.1	InterPro:Beta-grasp_dom_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0006435
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G18790_001
EnsemblPlants:GSMUA_Achr1P18790_001	EnsemblPlants:GSMUA_Achr1T18790_001	InterPro:IPR012675	UniProt:M0S137	PFAM:PF02824	PANTHER:PTHR11451
PANTHER:PTHR11451:SF46	SUPFAM:SSF55186	SUPFAM:SSF81271	InterPro:TGS	InterPro:TGS-like	InterPro:Thr-tRNA-ligase_IIa
InterPro:Thr/Ala-tRNA-synth_IIc_edit	UniParc:UPI000296710F	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G18790_001]

Coordinates

chr1:+:14039008..14044848

Molecular Weight (calculated)

30746.0 Da

IEP (calculated)

6.097

GRAVY (calculated)

-0.160

Length

273 amino acids

Sequence
(BLAST)

001: MGKSVARGGS SEAKPKEKPS PVSSHKDEAY LDAVIQKRVH LFESIQAQQK AERLDLDGES IRITLPDGTI KEGKKWLTSP MDIAKEISSG LAASALIAQV
101: NGFLWDMTRP LEGDSNLKLF KFDDAEGRDT FWHSSAHILG QSLEMEYGCK LCIGPCTTRG EGFYYDAFYD ELTLNEEHFN QIQSRASKAV GLTSHIFHYL
201: GMDHVRTKDA IFDCWQELIL VFLLLKFLRP GFPSEVPFLC TYITLLPGPC EASSWKSMWA SRLVFMGYML IML

Best Arabidopsis Sequence Match ( AT5G26830.1 )
(BLAST)

001: MLLRLTARSI RRFTTSSSSL PLLSSSSFCT VPTMAANHPK DEAYLSAVIP KRIKLFEQIQ ANQLENLKSL PHDPIKVTLP DGNVKEGKKW ETTPMDIAAQ
101: ISKGLANSAL ISAVDDVLWD MNRPLEGDCK LELFKFDSDK GRDTLWHSSA HILGQALEQE YGCQLCIGPC TTRGEGFYYD GFYGELGLSD NHFPSIEAGA
201: AKAAKEAQPF ERIEVTKDQA LEMFSENNFK VELINGLPAD MTITVYRCGP LVDLCRGPHI PNTSFVKAFK CLRASSAYWK GDKDRESLQR VYGISYPDQK
301: QLKKYLQFLE EAKKYDHRLL GQKQELFFSH QLSPGSYFFL PLGTRVYNRL MDFIKNQYWH RGYTEVITPN MYNMELWQTS GHADNYKDNM FTFNIEKQEF
401: GLKPMNCPGH CLIFQHRVRS YRELPMRLAD FGVLHRNEAS GALSGLTRVR RFQQDDAHIF CTTEQVKGEV QGVLEFIDYV YKVFGFTYEL KLSTRPEKYL
501: GDLETWDKAE ADLKEAIEAF GKPLVLNEGD GAFYGPKIDI TVSDAMNRKF QCATLQLDFQ LPIRFNLEYA AEDEAKKSRP VMIHRAVLGS VERMFAILLE
601: HYKGKWPFWI SPRQAIVCPI SEKSQQYAEK VQKQIKDAGF YVDADLTDRK IDKKVREAQL AQYNYILVVG ETEAATGQVS VRVRDNAAHS VKSIEDLLEE
701: FKAKTAEFV

Arabidopsis Description

THRRSThreonine--tRNA ligase, mitochondrial 1 [Source:UniProtKB/Swiss-Prot;Acc:O04630]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.