Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G094550.2 | |
| HORVU7Hr1G075380.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04842.1 | HORVU3Hr1G094550.2 | AT5G40930.1 | 21848659 |
| AT2G04842.1 | HORVU7Hr1G075380.6 | AT5G40930.1 | 21848659 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G310700.1 | Wheat | plastid | 88.17 | 94.44 |
| TraesCS6A01G282300.1 | Wheat | plastid | 90.76 | 94.3 |
| TraesCS6D01G262800.1 | Wheat | plastid | 90.19 | 93.7 |
| KXG36582 | Sorghum | plastid | 80.09 | 83.46 |
| Os02t0538000-01 | Rice | plasma membrane | 79.65 | 81.9 |
| Zm00001d021962_P001 | Maize | plastid | 73.16 | 79.84 |
| KRH17875 | Soybean | mitochondrion | 27.71 | 75.59 |
| Bra013193.1-P | Field mustard | plastid | 71.0 | 75.46 |
| CDY50043 | Canola | plastid | 70.85 | 75.31 |
| KRG96128 | Soybean | nucleus | 70.42 | 74.85 |
| AT2G04842.1 | Thale cress | plastid | 70.13 | 74.77 |
| CDX93065 | Canola | plastid | 71.0 | 74.66 |
| GSMUA_Achr4P01570_001 | Banana | plastid | 71.86 | 74.55 |
| Solyc07g048080.2.1 | Tomato | nucleus | 70.27 | 72.36 |
| VIT_12s0057g00400.t01 | Wine grape | plastid | 70.71 | 71.95 |
| PGSC0003DMT400015710 | Potato | mitochondrion, plastid | 69.55 | 71.73 |
| HORVU1Hr1G057910.4 | Barley | cytosol | 20.63 | 35.93 |
| HORVU3Hr1G012410.6 | Barley | mitochondrion | 35.5 | 33.88 |
Protein Annotations
Description
No Description!
Coordinates
chrchr6H:+:493228748..493233864
Molecular Weight (calculated)
79040.2 Da
IEP (calculated)
7.252
GRAVY (calculated)
-0.549
Length
693 amino acids
Sequence
(BLAST)
(BLAST)
001: NDQRAKKSPT PATRSHPDLG AARPTRMATL SAPLLRSHHR HLPVTSSPRR CSTAAAFPRG FAPLEPLSSR RPSRTAARSA STSAAAPEAA EATGHAAQAE
101: TAGEEEVEAR VVLPTNESSE NLLRIRHTCA HVMAMAVQKL FPNSKVTIGP WIDNGFYYDF DMEPLTDKDL KKIKKEMDRI IRRNLPLVRE EVSREEAQKR
201: IQALNEPYKL EILERIKEEP ITIYHIGKYW WDLCAGPHVE STGKIQRKAV ELESVAGAYW RGDENNQMLQ RIYGTAWESE DQLKAYIHFK EEAKRRDHRR
301: LGQDLDLFSI QEDAGGGLVF WHPKGAIIRH ILEDSWKQTH LQRGYDLLYT PHVAKADLWK ISGHIDFYKE NMYNQMDVED EPYQLRPMNC PYHILVYKRK
401: LQSYRDLPIR VAELGTVYRY ELSGALHGLF RVRGFTQDDA HIFCLEDQIK DEIRGVLDLT EEILGQFGFR NYEVNLSTRP EKSVGSDDIW EKATIALKDA
501: LDDKGWGYTI DEGGGAFYGP KIDLKIEDAL GRKWQCSTVQ VDFNLPERFD ITYVDSHTEK KRPIMIHRAI LGSLERFFGI LIENYAGDFP LWLAPTQARI
601: LPVTNNELQY CNEVASELKS RGIRAEVCHG ERLPKLIRNA ETQKVPLMAV VGPKEVEART LTIRSRHNGE MGTMPVDNFI SKIQSAVTDK SSL
101: TAGEEEVEAR VVLPTNESSE NLLRIRHTCA HVMAMAVQKL FPNSKVTIGP WIDNGFYYDF DMEPLTDKDL KKIKKEMDRI IRRNLPLVRE EVSREEAQKR
201: IQALNEPYKL EILERIKEEP ITIYHIGKYW WDLCAGPHVE STGKIQRKAV ELESVAGAYW RGDENNQMLQ RIYGTAWESE DQLKAYIHFK EEAKRRDHRR
301: LGQDLDLFSI QEDAGGGLVF WHPKGAIIRH ILEDSWKQTH LQRGYDLLYT PHVAKADLWK ISGHIDFYKE NMYNQMDVED EPYQLRPMNC PYHILVYKRK
401: LQSYRDLPIR VAELGTVYRY ELSGALHGLF RVRGFTQDDA HIFCLEDQIK DEIRGVLDLT EEILGQFGFR NYEVNLSTRP EKSVGSDDIW EKATIALKDA
501: LDDKGWGYTI DEGGGAFYGP KIDLKIEDAL GRKWQCSTVQ VDFNLPERFD ITYVDSHTEK KRPIMIHRAI LGSLERFFGI LIENYAGDFP LWLAPTQARI
601: LPVTNNELQY CNEVASELKS RGIRAEVCHG ERLPKLIRNA ETQKVPLMAV VGPKEVEART LTIRSRHNGE MGTMPVDNFI SKIQSAVTDK SSL
001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL
Arabidopsis Description
EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.