Factsheet for VIT_12s0057g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0068g02030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04842.1	VIT_14s0068g02030.t01	AT5G40930.1	21848659

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96128	Soybean	nucleus	76.51	79.91
CDY50043	Canola	plastid	76.21	79.6
Bra013193.1-P	Field mustard	plastid	75.77	79.14
AT2G04842.1	Thale cress	plastid	75.33	78.92
KRH17875	Soybean	mitochondrion	29.37	78.74
CDX93065	Canola	plastid	75.62	78.15
Solyc07g048080.2.1	Tomato	nucleus	76.8	77.71
PGSC0003DMT400015710	Potato	mitochondrion, plastid	76.21	77.23
GSMUA_Achr4P01570_001	Banana	plastid	74.6	76.05
KXG36582	Sorghum	plastid	73.42	75.19
TraesCS6D01G262800.1	Wheat	plastid	72.1	73.61
TraesCS6B01G310700.1	Wheat	plastid	69.46	73.11
TraesCS6A01G282300.1	Wheat	plastid	71.51	73.01
Os02t0538000-01	Rice	plasma membrane	72.1	72.85
Zm00001d021962_P001	Maize	plastid	66.37	71.18
HORVU6Hr1G070790.5	Barley	plastid	71.95	70.71
VIT_19s0015g00470.t01	Wine grape	cytosol	35.39	35.13
VIT_01s0026g00340.t01	Wine grape	cytosol	34.95	34.69

Protein Annotations

KEGG:00970+6.1.1.3	EntrezGene:100256277	wikigene:100256277	MapMan:17.2.19	Gene3D:3.30.54.20	Gene3D:3.30.930.10
Gene3D:3.30.980.10	Gene3D:3.40.50.800	InterPro:Anticodon-bd	InterPro:Anticodon-bd_dom_sf	ProteinID:CCB51701	ProteinID:CCB51701.1
UniProt:F6HHK5	EMBL:FN595759	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0004812	GO:GO:0004829	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005975	GO:GO:0006139
GO:GO:0006412	GO:GO:0006418	GO:GO:0006435	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798
GO:GO:0019538	GO:GO:0043039	GO:GO:0071555	InterPro:IPR006195	InterPro:IPR036621	EntrezGene:LOC100256277
wikigene:LOC100256277	HAMAP:MF_00184	PFAM:PF00587	PFAM:PF03129	PFAM:PF07973	PRINTS:PR01047
PFscan:PS50862	PANTHER:PTHR11451	PANTHER:PTHR11451:SF44	SMART:SM00863	SUPFAM:SSF52954	SUPFAM:SSF55186
SUPFAM:SSF55681	TIGRFAMs:TIGR00418	InterPro:Thr-tRNA-ligase_IIa	InterPro:Thr/Ala-tRNA-synth_IIc_edit	InterPro:ThrRS_core	UniParc:UPI0002108A99
ArrayExpress:VIT_12s0057g00400	EnsemblPlantsGene:VIT_12s0057g00400	EnsemblPlants:VIT_12s0057g00400.t01	RefSeq:XP_002270988	RefSeq:XP_002270988.2	InterPro:aa-tRNA-synt_IIb
InterPro:aa-tRNA-synth_II	SEG:seg	InterPro:tRNA_SAD	:	:	:

Description

No Description!

Coordinates

chr12:-:9006430..9010756

Molecular Weight (calculated)

78231.4 Da

IEP (calculated)

6.773

GRAVY (calculated)

-0.448

Length

681 amino acids

Sequence
(BLAST)

001: MAASHSLFAS SLKLTSNQLL HHYRCPLKRI VSISGGFSRS RIRVLPLYHK AHGLSTTSSA VATDSTDSTD SAVLADDKGL GEAPPEKIVL PTNESSERLL
101: RIRHTCAHVM AMAVQKLFPD AKVTIGPWIE NGFYYDFDME PLTDKDLKRI KKEMDRIIGR NLPLIREEVS RDEAQRRIMA VNEPYKMEIL DSIQEDPITI
201: YHIGGEWWDL CAGPHVEYTG NINRKAVELE SVAGAYWRGD EKKQMLQRIY GTAWENEEQL KAYLHFKEEA KRRDHRRLGQ DLDLFSIQDE AGGGLVFWHP
301: KGAIVRRIIE DSWKKIHIEH GYDLLYTPHV ARADLWKTSG HLDFYRENMY SQITIEDELY QLRPMNCPYH ILIYKRKLHS YRDFPIRVAE LGTVYRYELS
401: GSLHGLFRVR GFTQDDAHIF CLEDQIKDEI RGVLDLTEEI LLQFGFSKYE VNLSTRPEKA VGADDIWEKA TSALRDALDD KGWSYRIDEG GGAFYGPKID
501: LKIEDALGRK WQCSTIQANR LDLSFTKEVD FNLPQRFDIT YVDSNSEKQR PIMIHRAVLG SLERFFGVLI EHYAGDFPLW LSPIQARVLP VTDTQLEYCN
601: EVTNKLKANG IRAEVCHGER LPKLIRNSEK QRIPLMAVVG PKEVETQTVT VRSRFGGELG TMIVEDFISR TKSATENRTS F

Best Arabidopsis Sequence Match ( AT2G04842.2 )
(BLAST)

001: MASSHSLLFS SSFLSKPSSF TSSLRRFVYL PTRQFWPRQR HGFSTVFAVA TEPAISSSGP KKAEPSTVVL PSNESSDKLL KIRHTCAHVM AMAVQKLFPD
101: AKVTIGPWID NGFYYDFDME PLTDKDLKRI KKEMDRIISR NLPLLREEVS REEAKKRIMA INEPYKMEIL DGIKEEPITV YHIGNEWWDL CAGPHVETTG
201: KINKKAVELE SVAGAYWRGD EKRQMLQRIY GTAWESEEQL KAYLHFKEEA KRRDHRRIGQ DLDLFSIQDE AGGGLVFWHP KGAIVRNIIE ESWKKMHVEH
301: GYDLIYTPHV AKADLWKISG HLDFYRENMY DQMEIEDELY QLRPMNCPYH ILLYQRKRQS YRDLPIRVAE LGTVYRYELS GSLHGLFRVR GFTQDDAHIF
401: CLEDQIKDEI RGVLDLTEEI LSRFGFNKYE VNLSTRPEKS VGGDDIWEKA TCALRDALDD KGWSYEVDEG GGAFYGPKID LKIEDALGRK WQCSTIQVDF
501: NLPQRFDITY VDTNSDKKRP IMIHRAVLGS LERFFGVLIE HYAGDFPLWL SPVQVRVLPV TDNQLEFCKE VSKKLRACGV RAELCHGERL PKLIRNAETQ
601: KIPLMAVVGP KEVETGTVTV RSRFGGELGT IPVDDLINKI NIAVETRTAL

Arabidopsis Description

EMB2761Threonine--tRNA ligase, chloroplastic/mitochondrial 2 [Source:UniProtKB/Swiss-Prot;Acc:F4IFC5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.