Factsheet for TraesCS5A01G279400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G278700.1	Wheat	cytosol	100.0	100.0
TraesCS5D01G286400.1	Wheat	cytosol	100.0	100.0
TraesCS5A01G279100.1	Wheat	golgi	97.74	97.74
Os09t0501200-01	Rice	nucleus	90.98	90.98
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	90.98	90.98
HORVU5Hr1G075500.3	Barley	cytosol	100.0	90.48
EER97002	Sorghum	cytosol	89.47	89.47
Zm00001d006064_P002	Maize	cytosol	88.72	88.06
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	84.96	84.96
KRH18320	Soybean	endoplasmic reticulum	84.21	84.21
GSMUA_Achr7P19740_001	Banana	cytosol	84.21	84.21
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	84.21	84.21
GSMUA_Achr10P...	Banana	cytosol	84.21	84.21
KRH12802	Soybean	cytosol	84.21	84.21
KRH31095	Soybean	nucleus	84.21	84.21
KRH42824	Soybean	cytosol, plastid	84.21	84.21
KRH58920	Soybean	cytosol, plastid	84.21	84.21
KRH67946	Soybean	endoplasmic reticulum	83.46	83.46
Solyc08g006900.2.1	Tomato	nucleus	83.46	83.46
PGSC0003DMT400022579	Potato	cytosol	83.46	83.46
KRH42825	Soybean	nucleus	82.71	82.71
Solyc02g070310.2.1	Tomato	nucleus, plastid	78.95	78.95
AT4G18100.1	Thale cress	cytosol	78.2	78.2
PGSC0003DMT400005838	Potato	cytosol	78.2	78.2
CDY61673	Canola	cytosol	76.69	76.69
CDY35163	Canola	cytosol	76.69	76.69
CDY08886	Canola	cytosol	76.69	76.69
CDY01520	Canola	extracellular	76.69	76.69
CDX90420	Canola	cytosol	76.69	76.69
CDX78825	Canola	cytosol	76.69	76.69
CDX76545	Canola	cytosol	76.69	76.69
Bra021023.1-P	Field mustard	cytosol	76.69	76.69
Bra013284.1-P	Field mustard	cytosol	76.69	76.69
Bra012616.1-P	Field mustard	cytosol	76.69	76.69
Zm00001d021018_P002	Maize	cytosol	88.72	76.13
TraesCS7A01G256300.1	Wheat	cytosol	93.23	76.07
CDY33476	Canola	cytosol	75.94	75.94
CDY03219	Canola	cytosol	75.94	75.94
CDX77662	Canola	cytosol	75.94	75.94
AT5G46430.1	Thale cress	cytosol	75.94	75.94
Bra017545.1-P	Field mustard	cytosol	75.19	75.19
VIT_00s0260g00080.t01	Wine grape	cytosol	74.44	73.33
PGSC0003DMT400054361	Potato	cytosol	41.35	72.37
KRH12807	Soybean	cytosol	55.64	69.16
GSMUA_Achr6P12040_001	Banana	cytosol	84.21	68.71
CDY35926	Canola	cytosol	35.34	38.21
CDY28057	Canola	cytosol	38.35	37.23
PGSC0003DMT400035383	Potato	cytosol, mitochondrion	77.44	27.25

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PD003823	PFAM:PF01655	PANTHER:PTHR23413
InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_sf	SMART:SM01393	SUPFAM:SSF52042	EnsemblPlantsGene:TraesCS5A01G279400	EnsemblPlants:TraesCS5A01G279400.1
TIGR:cd00513	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:488315727..488317551

Molecular Weight (calculated)

15555.2 Da

IEP (calculated)

11.353

GRAVY (calculated)

-0.650

Length

133 amino acids

Sequence
(BLAST)

001: MAVPILKTAI VKKRVKHFKR AHSDRYIGLK QSWRRPKGID SRVRRKFKGC TLMPNIGYGS NKKTRHYLPN KFKKFVVHNV SELELLMMHN RTYCAEIAHN
101: VSTQKRKAIV ERAAQLDVVV TNKLARLRSQ EDE

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.