Factsheet for PGSC0003DMT400035383

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063187

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46430.1	PGSC0003DMT400063187	AT3G48100.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400005838	Potato	cytosol	33.86	96.24
Solyc02g070310.2.1	Tomato	nucleus, plastid	33.6	95.49
PGSC0003DMT400054361	Potato	cytosol	17.99	89.47
PGSC0003DMT400022579	Potato	cytosol	31.48	89.47
AT4G18100.1	Thale cress	cytosol	29.89	84.96
Bra021023.1-P	Field mustard	cytosol	29.37	83.46
CDX76545	Canola	cytosol	29.37	83.46
CDX78825	Canola	cytosol	29.37	83.46
CDX90420	Canola	cytosol	29.37	83.46
CDY01520	Canola	extracellular	29.37	83.46
Bra013284.1-P	Field mustard	cytosol	29.37	83.46
CDY08886	Canola	cytosol	29.37	83.46
Bra012616.1-P	Field mustard	cytosol	29.37	83.46
CDY35163	Canola	cytosol	29.37	83.46
CDY61673	Canola	cytosol	29.37	83.46
VIT_10s0003g02650.t01	Wine grape	cytosol, plastid	29.37	83.46
Os09t0501200-01	Rice	nucleus	29.1	82.71
KRH18320	Soybean	endoplasmic reticulum	29.1	82.71
CDY33476	Canola	cytosol	29.1	82.71
CDY03219	Canola	cytosol	29.1	82.71
CDX77662	Canola	cytosol	29.1	82.71
AT5G46430.1	Thale cress	cytosol	29.1	82.71
Bra017545.1-P	Field mustard	cytosol	28.84	81.95
KRH12802	Soybean	cytosol	28.84	81.95
Os09t0502000-01	Rice	nucleus	28.57	81.2
KRH67946	Soybean	endoplasmic reticulum	28.31	80.45
KRH58920	Soybean	cytosol, plastid	28.31	80.45
KRH31095	Soybean	nucleus	28.31	80.45
KRH42824	Soybean	cytosol, plastid	28.31	80.45
GSMUA_Achr3P02470_001	Banana	cytosol, mitochondrion, nucleus, plastid	28.31	80.45
TraesCS5A01G279100.1	Wheat	golgi	28.04	79.7
GSMUA_Achr10P...	Banana	cytosol	28.04	79.7
EER97002	Sorghum	cytosol	28.04	79.7
GSMUA_Achr7P19740_001	Banana	cytosol	28.04	79.7
Zm00001d049790_P007	Maize	cytosol	27.78	78.95
TraesCS7B01G152900.1	Wheat	golgi, unclear	27.78	78.95
Zm00001d021020_P001	Maize	mitochondrion, plastid	27.78	78.95
KRH42825	Soybean	nucleus	27.78	78.95
Zm00001d006064_P002	Maize	cytosol	27.78	78.36
TraesCS7B01G152300.1	Wheat	cytosol, mitochondrion	27.78	78.36
EES15331	Sorghum	cytosol	27.51	78.2
EER99136	Sorghum	cytosol	27.51	78.2
TraesCS5A01G279400.1	Wheat	unclear	27.25	77.44
TraesCS5B01G278700.1	Wheat	cytosol	27.25	77.44
TraesCS7A01G255800.1	Wheat	cytosol, mitochondrion	27.25	77.44
TraesCS5D01G286400.1	Wheat	cytosol	27.25	77.44
Os08t0524600-00	Rice	cytosol, endoplasmic reticulum	8.47	76.19
HORVU7Hr1G052800.8	Barley	cytosol	26.72	75.94
TraesCS7D01G254200.1	Wheat	cytosol, mitochondrion	27.78	70.95
HORVU5Hr1G075500.3	Barley	cytosol	27.25	70.07
HORVU5Hr1G075420.2	Barley	plastid	27.78	68.63
KRH12807	Soybean	cytosol	19.31	68.22
Zm00001d021018_P002	Maize	cytosol	27.78	67.74
TraesCS7A01G256300.1	Wheat	cytosol	28.04	65.03
GSMUA_Achr6P12040_001	Banana	cytosol	27.78	64.42
TraesCS7D01G257100.1	Wheat	cytosol, mitochondrion	27.78	64.42
Os09t0501700-00	Rice	nucleus	28.31	62.94
TraesCS5D01G286200.2	Wheat	cytosol, mitochondrion	28.04	60.92
TraesCS5B01G278500.2	Wheat	cytosol, mitochondrion	28.04	60.92
Zm00001d031560_P001	Maize	plastid	27.78	51.22

Protein Annotations

MapMan:17.1.2.1.33	GO:GO:0003674	GO:GO:0003676	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:M1B275	PFAM:PD003823	PFAM:PF01655	EnsemblPlantsGene:PGSC0003DMG400013598	PGSC:PGSC0003DMG400013598	EnsemblPlants:PGSC0003DMT400035383
ScanProsite:PS00580	PANTHER:PTHR23413	InterPro:Ribosomal_L32e	InterPro:Ribosomal_L32e_CS	InterPro:Ribosomal_L32e_sf	SMART:SM01393
SUPFAM:SSF52042	UniParc:UPI00029632A2	SEG:seg	:	:	:

Description

Ly200 [Source:PGSC_GENE;Acc:PGSC0003DMG400013598]

Coordinates

chr11:+:34697237..34701219

Molecular Weight (calculated)

43185.3 Da

IEP (calculated)

10.818

GRAVY (calculated)

-0.761

Length

378 amino acids

Sequence
(BLAST)

001: MVVPLLNKKV VKKRVKRFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGC VLMPNIGYGS DKKTRHYLPN GFKKFVVHNA SELEILMMHN RTYCAEIAHN
101: VSTRKRKEIV ERAAQLDVVI TNKLARKKLI DTWTGYDPDL LTFIDIVNEY NNPKLNESEK KDEAIKRQGE WASSRKGRVM TCNNCGEPNH NSKGCKKLVN
201: TKPMKRTTKL IDEPEEINLT APQSTQASQV VNFMSTPTLM HHAPQFSGLR PSIPSKTLDF ELSETSKQRS SKPDATTLQH TVHPDLTINF PNHDPDPTIR
301: PMVVSENAIF RARQEGPIPS GTRIINFVGD HNGVSVPSNL PYSPTNLTWK GKTVIIQGQL EMQNRQKIKK LKPRKGQK

Best Arabidopsis Sequence Match ( AT4G18100.1 )
(BLAST)

001: MAVPLLTKKV VKKRSAKFIR PQSDRRITVK ESWRRPKGID SRVRRKFKGV TLMPNVGYGS DKKTRHYLPN GFKKFVVHNT SELELLMMHN RTYCAEIAHN
101: VSTKKRKAIV ERASQLDVVV TNRLARLRSQ EDE

Arabidopsis Description

RPL32A60S ribosomal protein L32-1 [Source:UniProtKB/Swiss-Prot;Acc:P49211]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.