CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66593	Soybean	endoplasmic reticulum	96.67	96.67
GSMUA_Achr11P...	Banana	cytosol	70.0	77.17
GSMUA_Achr8P11020_001	Banana	nucleus	72.62	76.25
KRG88903	Soybean	nucleus	74.29	74.82
KRH25334	Soybean	nucleus	74.29	74.82
EES07516	Sorghum	nucleus	74.29	74.29
PGSC0003DMT400018083	Potato	nucleus	73.81	73.99
Zm00001d017476_P001	Maize	plasma membrane	74.29	73.93
VIT_15s0021g02090.t01	Wine grape	cytosol	77.86	73.81
Solyc01g090550.2.1	Tomato	nucleus	74.29	73.58
PGSC0003DMT400066980	Potato	nucleus	73.1	73.1
OQU82085	Sorghum	nucleus	72.62	72.97
Os02t0656500-01	Rice	nucleus	72.62	72.62
Os04t0549600-01	Rice	cytosol	71.9	72.6
KRH22611	Soybean	nucleus	71.67	72.18
KRH26709	Soybean	nucleus	71.43	71.94
TraesCS6D01G232600.1	Wheat	nucleus	72.14	71.29
TraesCS6B01G274600.1	Wheat	nucleus	72.14	71.29
TraesCS6A01G250800.1	Wheat	nucleus	72.14	71.29
HORVU0Hr1G016360.1	Barley	cytosol	27.38	64.97
HORVU0Hr1G018300.1	Barley	plastid	71.67	62.19
KRH61858	Soybean	cytosol	13.1	38.73
KRG96505	Soybean	nucleus	31.43	38.48
KRH68242	Soybean	endoplasmic reticulum	30.95	37.9
KRH69388	Soybean	cytosol	24.76	37.68
KRH10937	Soybean	cytosol	30.24	37.46
KRH74747	Soybean	cytosol	24.52	37.18
KRH00241	Soybean	cytosol, nucleus	29.52	36.58
KRG88624	Soybean	nucleus	29.29	36.5
KRH65726	Soybean	nucleus	29.29	36.5
KRH52529	Soybean	cytosol	27.86	35.89
KRH40259	Soybean	cytosol	13.57	35.85
KRH49388	Soybean	cytosol	29.52	35.84
KRH25647	Soybean	nucleus	29.76	35.82
KRH55895	Soybean	endoplasmic reticulum, nucleus	29.76	35.51
KRH75968	Soybean	nucleus	28.33	35.31
KRH69236	Soybean	endoplasmic reticulum	28.81	34.97
KRH45833	Soybean	cytosol	24.05	34.95
KRG99186	Soybean	cytosol	24.05	34.95
KRH63415	Soybean	cytosol	12.14	34.69
KRH61857	Soybean	cytosol, nucleus	9.52	34.48
KRH21363	Soybean	cytosol	25.0	34.09
KRH10940	Soybean	cytosol	26.67	33.33
KRH21362	Soybean	cytosol	26.67	32.94
KRH54495	Soybean	nucleus	27.38	32.76
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	20.0	31.94
KRH63417	Soybean	nucleus	15.24	31.53
KRH55068	Soybean	cytosol	9.29	28.47
KRH60063	Soybean	endoplasmic reticulum, golgi	12.62	26.77
KRH27511	Soybean	mitochondrion	28.1	26.64
KRH36456	Soybean	mitochondrion	27.62	26.19
KRH59311	Soybean	plastid	26.9	26.1
KRH43163	Soybean	plastid	26.9	25.86
KRH44477	Soybean	plastid	27.14	25.68
KRG97564	Soybean	plastid	26.67	25.45
KRH13903	Soybean	mitochondrion	26.9	25.45
KRH31310	Soybean	nucleus, plastid	26.43	25.23
KRH43470	Soybean	mitochondrion	26.43	25.0
KRH09715	Soybean	nucleus, plastid	28.57	24.34
KRH48662	Soybean	nucleus, plastid	28.81	23.05
KRH23590	Soybean	nucleus	18.1	21.29
KRH10414	Soybean	cytosol	19.05	21.0
KRH16800	Soybean	mitochondrion	22.86	20.47
KRH72418	Soybean	mitochondrion	22.86	20.47
KRH44054	Soybean	cytosol	18.1	19.79
KRG90292	Soybean	cytosol, nucleus, plastid	13.1	19.23
KRH64663	Soybean	plastid	16.19	19.21

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100812236	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	EMBL:ACUP02004279
InterPro:DnaJ	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_07G110200	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950
GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	UniProt:I1KJN4	InterPro:IPR001305
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH48754	ProteinID:KRH48754	ProteinID:KRH48754.1
HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF11	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF49493	SUPFAM:SSF57938	UniParc:UPI0002338AA8	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:11240311..11243347

Molecular Weight (calculated)

47147.6 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.880

Length

420 amino acids

Sequence
(BLAST)

001: MFGRGGPRRS DNSKYYDILG VSKNASEDEI KKAYRKAAMK NHPDKGGDPE KFKELGQAYE VLSDPEKKDL YDQYGEDALK EGMGGGGSFH NPFDIFESFF
101: GGASFGGGGS SRGRRQKHGE DVVHSLKVSL EDVYNGTTKK LSLSRNVFCS KCKGKGSKSG TAGRCFGCQG TGMKITRRQI GLGMIQQMQH VCPDCRGSGE
201: VINERDKCPQ CKGNKISQEK KVLEVHVEKG MQQGQKIVFE GQADEAPDTI TGDIVFVLQV KDHPRFRREQ DDLFIDQNLS LTEALCGFQF AVKHLDGRQL
301: LIKSNPGEVI KPGQYKALND EGMPQHNRPF MKGRLYIQFN VDFPDSGFLS PDQCQLLEKV LPQKSSKHVS DMELDDCEET TLHDVNFKEE MRRKQQQQHR
401: EAYDEDDDEP SGHRVQCAQQ

Best Arabidopsis Sequence Match ( AT1G80030.1 )
(BLAST)

001: MAALASPSLI PSSLCFAAAA DGPRSLSSNF SAFSDGGSNF RYHKSFLSLS SSSSSSTPYR NRRGRSLVVF ATSGDYYATL GVSKSANNKE IKAAYRRLAR
101: QYHPDVNKEP GATEKFKEIS AAYEVLSDEQ KRALYDQYGE AGVKSTVGGA SGPYTSNPFD LFETFFGASM GGFPGMDQAD FGRTRRSRVT KGEDLRYDIT
201: LELSEAIFGS EKEFDLTHLE TCEACAGTGA KAGSKMRICS TCGGRGQVMR TEQTPFGMFS QVSICPNCGG DGEVISENCR KCSGEGRVRI KKSIKVKIPP
301: GVSAGSILRV AGEGDSGPRG GPPGDLYVYL DVEDVRGIER DGINLLSTLS ISYLDAILGA VVKVKTVEGD TELQIPPGTQ PGDVLVLAKK GVPKLNRPSI
401: RGDHLFTVKV SVPNQISAGE RELLEELASL KDTSSNRSRT RAKPQQPSTL STAPSGSENK KDEVKEENEE PEQENYLWNN IKEFAGSVAN GALKWLRDNL

Arabidopsis Description

Molecular chaperone Hsp40/DnaJ family protein [Source:UniProtKB/TrEMBL;Acc:Q0WN54]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.