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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 2
  • golgi 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytoskeleton, cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi, mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 nucleus: 21132161
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH55895 Soybean endoplasmic reticulum, nucleus 95.99 95.17
KRH10937 Soybean cytosol 80.8 83.19
AT2G20560.1 Thale cress cytosol 80.23 83.09
CDY65077 Canola cytosol 79.37 82.44
CDY13869 Canola cytosol 78.8 81.36
CDY35188 Canola cytosol 75.07 80.86
Bra031127.1-P Field mustard cytosol 78.22 80.77
KRH21363 Soybean cytosol 70.77 80.19
Bra024199.1-P Field mustard cytoskeleton, cytosol, nucleus 73.35 79.75
CDY29908 Canola cytoskeleton, cytosol, nucleus 73.07 79.44
CDX92876 Canola cytoskeleton, cytosol, nucleus 71.92 78.93
CDY38388 Canola cytosol 76.5 78.07
AT4G28480.1 Thale cress cytoskeleton, cytosol, nucleus 77.65 77.87
CDX97443 Canola cytosol 66.76 77.41
Bra011031.1-P Field mustard cytosol 77.94 77.27
KRH12423 Soybean cytoskeleton, cytosol, nucleus 58.17 77.19
KRH00241 Soybean cytosol, nucleus 73.93 76.11
KRG88624 Soybean nucleus 71.06 73.59
KRH65726 Soybean nucleus 70.77 73.29
KRH75968 Soybean nucleus 70.49 73.0
KRH49388 Soybean cytosol 71.92 72.54
KRH21362 Soybean cytosol 66.48 68.24
KRH10940 Soybean cytosol 65.04 67.56
KRH61858 Soybean cytosol 27.22 66.9
KRH52529 Soybean cytosol 57.88 61.96
KRH63415 Soybean cytosol 26.07 61.9
KRH69388 Soybean cytosol 46.7 59.06
KRG99186 Soybean cytosol 47.85 57.79
KRH74747 Soybean cytosol 45.85 57.76
KRH40259 Soybean cytosol 26.07 57.23
KRH61857 Soybean cytosol, nucleus 18.91 56.9
KRH45833 Soybean cytosol 46.99 56.75
KRH54495 Soybean nucleus 56.73 56.41
KRH63417 Soybean nucleus 30.09 51.72
KRH60063 Soybean endoplasmic reticulum, golgi 28.08 49.49
KRG96505 Soybean nucleus 34.67 35.28
KRH68242 Soybean endoplasmic reticulum 34.1 34.69
KRH69236 Soybean endoplasmic reticulum 32.09 32.37
KRH55068 Soybean cytosol 12.61 32.12
KRH25334 Soybean nucleus 35.82 29.98
KRG88903 Soybean nucleus 35.82 29.98
KRH48754 Soybean endoplasmic reticulum 35.82 29.76
KRH26709 Soybean nucleus 35.53 29.74
KRH22611 Soybean nucleus 35.53 29.74
KRH66593 Soybean endoplasmic reticulum 35.53 29.52
KRH10414 Soybean cytosol 31.81 29.13
KRH64663 Soybean plastid 27.79 27.4
KRH44054 Soybean cytosol 29.51 26.82
KRG90292 Soybean cytosol, nucleus, plastid 19.77 24.13
KRH31310 Soybean nucleus, plastid 28.94 22.95
KRG97564 Soybean plastid 28.94 22.95
KRH59311 Soybean plastid 28.37 22.86
KRH43163 Soybean plastid 28.08 22.43
KRH09715 Soybean nucleus, plastid 30.66 21.7
KRH44477 Soybean plastid 26.93 21.17
KRH27511 Soybean mitochondrion 26.07 20.54
KRH36456 Soybean mitochondrion 25.79 20.32
KRH43470 Soybean mitochondrion 24.64 19.37
KRH13903 Soybean mitochondrion 24.64 19.37
KRH72418 Soybean mitochondrion 25.21 18.76
KRH16800 Soybean mitochondrion 25.21 18.76
KRH23590 Soybean nucleus 18.62 18.21
KRH48662 Soybean nucleus, plastid 27.22 18.1
Protein Annotations
Gene3D:1.10.287.110EntrezGene:100778672MapMan:19.1.5.2Gene3D:2.60.260.20EMBL:ACUP02007307EMBL:BT093737
UniProt:C6T8E0InterPro:DnaJ_CInterPro:DnaJ_domainInterPro:DnaJ_domain_CSEnsemblPlantsGene:GLYMA_12G117900GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0006457GO:GO:0008150GO:GO:0009987GO:GO:0051082
InterPro:HSP40/DnaJ_pept-bdInterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfEnsemblPlants:KRH25647ProteinID:KRH25647
ProteinID:KRH25647.1PFAM:PF00226PFAM:PF01556PRINTS:PR00625ScanProsite:PS00636PFscan:PS50076
PANTHER:PTHR24078PANTHER:PTHR24078:SF520SMART:SM00271SUPFAM:SSF46565SUPFAM:SSF49493UniParc:UPI0001B16085
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr12:+:12095819..12098847
Molecular Weight (calculated)
38240.8 Da
IEP (calculated)
9.596
GRAVY (calculated)
-0.592
Length
349 amino acids
Sequence
(BLAST)
001: MGVDYYKILQ VDRSAKDDDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYEVLSDP QKRAIYDQYG EEGLKGQVPP PDAGGAGTGT TFFSTGDIPG
101: SFRFNPRNAD DIFAEFFGFS SPFGGMGGRG GGGSGGGMRS RFPGGMFGDD MFASFGEGGG VHMSQGASRK APPIESKLPC TLEEIYKGTT KKMKISREIA
201: DASGKTMPVE EILTINVKPG WKKGTKITFP EKGNEQPNVM PADLVFIIDE KPHGVFTRDG NDLVVTQKIS LAEALTGYTV HLTTLDGRNL TIPINNVIHP
301: TYEEVVPREG MPLPKDPSKK GNLRIKFNIK FPTRLTEEQK AGIRKLLNA
Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)
001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG
Arabidopsis Description
At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.