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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 2
  • golgi 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytoskeleton, cytosol, golgi, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:golgi, mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH25647 Soybean nucleus 95.17 95.99
AT2G20560.1 Thale cress cytosol 79.83 83.38
CDY65077 Canola cytosol 79.26 83.04
KRH10937 Soybean cytosol 79.55 82.6
CDY13869 Canola cytosol 78.69 81.95
Bra031127.1-P Field mustard cytosol 78.12 81.36
CDY35188 Canola cytosol 74.15 80.56
Bra024199.1-P Field mustard cytoskeleton, cytosol, nucleus 72.44 79.44
CDY29908 Canola cytoskeleton, cytosol, nucleus 72.16 79.13
KRH21363 Soybean cytosol 69.03 78.9
CDX92876 Canola cytoskeleton, cytosol, nucleus 71.02 78.62
AT4G28480.1 Thale cress cytoskeleton, cytosol, nucleus 76.99 77.87
CDY38388 Canola cytosol 75.57 77.78
Bra011031.1-P Field mustard cytosol 76.99 76.99
CDX97443 Canola cytosol 65.62 76.74
KRH12423 Soybean cytoskeleton, cytosol, nucleus 57.1 76.43
KRH00241 Soybean cytosol, nucleus 73.3 76.11
KRG88624 Soybean nucleus 70.17 73.29
KRH65726 Soybean nucleus 69.89 73.0
KRH49388 Soybean cytosol 71.59 72.83
KRH75968 Soybean nucleus 69.6 72.7
KRH21362 Soybean cytosol 65.91 68.24
KRH10940 Soybean cytosol 64.49 67.56
KRH61858 Soybean cytosol 26.7 66.2
KRH52529 Soybean cytosol 57.1 61.66
KRH63415 Soybean cytosol 25.57 61.22
KRH69388 Soybean cytosol 45.45 57.97
KRG99186 Soybean cytosol 46.88 57.09
KRH74747 Soybean cytosol 44.6 56.68
KRH40259 Soybean cytosol 25.57 56.6
KRH45833 Soybean cytosol 46.31 56.4
KRH54495 Soybean nucleus 55.97 56.13
KRH61857 Soybean cytosol, nucleus 18.47 56.03
KRH63417 Soybean nucleus 30.11 52.22
KRH60063 Soybean endoplasmic reticulum, golgi 28.12 50.0
KRG96505 Soybean nucleus 33.52 34.4
KRH68242 Soybean endoplasmic reticulum 32.95 33.82
KRH69236 Soybean endoplasmic reticulum 31.25 31.79
KRH55068 Soybean cytosol 12.22 31.39
KRH48754 Soybean endoplasmic reticulum 35.51 29.76
KRH66593 Soybean endoplasmic reticulum 35.23 29.52
KRG88903 Soybean nucleus 34.94 29.5
KRH25334 Soybean nucleus 34.94 29.5
KRH22611 Soybean nucleus 34.66 29.26
KRH26709 Soybean nucleus 34.66 29.26
KRH10414 Soybean cytosol 30.4 28.08
KRH64663 Soybean plastid 26.99 26.84
KRH44054 Soybean cytosol 28.12 25.78
KRG90292 Soybean cytosol, nucleus, plastid 19.6 24.13
KRH59311 Soybean plastid 27.56 22.4
KRH31310 Soybean nucleus, plastid 27.84 22.27
KRG97564 Soybean plastid 27.84 22.27
KRH43163 Soybean plastid 27.27 21.97
KRH09715 Soybean nucleus, plastid 30.11 21.5
KRH44477 Soybean plastid 26.14 20.72
KRH27511 Soybean mitochondrion 25.85 20.54
KRH36456 Soybean mitochondrion 25.57 20.32
KRH43470 Soybean mitochondrion 24.15 19.14
KRH13903 Soybean mitochondrion 24.15 19.14
KRH16800 Soybean mitochondrion 24.43 18.34
KRH72418 Soybean mitochondrion 24.43 18.34
KRH23590 Soybean nucleus 18.47 18.21
KRH48662 Soybean nucleus, plastid 26.42 17.71
Protein Annotations
Gene3D:1.10.287.110EntrezGene:100797487MapMan:19.1.5.2Gene3D:2.60.260.20EMBL:ACUP02004065InterPro:DnaJ_C
InterPro:DnaJ_domainInterPro:DnaJ_domain_CSEnsemblPlantsGene:GLYMA_06G289000GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0006457GO:GO:0008150GO:GO:0009987GO:GO:0051082InterPro:HSP40/DnaJ_pept-bdUniProt:I1KEY3
InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfEnsemblPlants:KRH55895ProteinID:KRH55895ProteinID:KRH55895.1
PFAM:PF00226PFAM:PF01556PRINTS:PR00625ScanProsite:PS00636PFscan:PS50076PANTHER:PTHR24078
PANTHER:PTHR24078:SF520SMART:SM00271SUPFAM:SSF46565SUPFAM:SSF49493UniParc:UPI000233A480SEG:seg
Description
hypothetical protein
Coordinates
chr6:-:47766483..47769538
Molecular Weight (calculated)
38456.9 Da
IEP (calculated)
9.590
GRAVY (calculated)
-0.616
Length
352 amino acids
Sequence
(BLAST)
001: MGVDYYKILQ VDRSAKDDDL KKAYRKLAMK WHPDKNPNNK KEAEAKFKQI SEAYEVLSDP QKKAIYDQYG EEGLKGQVPP PDAGGAGTGT TFFSTGDMPG
101: SFRFNPRNAD DIFAEFFGFS SPFGGMGGRG GGGGGGGGGM RSRFPGGMFG DDMFASFGEG GGIHMSQGAP RKAAPIENKL PCTLEEIYKG TTKKMKISRE
201: IADASGKTMP VEEILTINVK PGWKKGTKIT FPEKGNEQPN VTPADLVFII DEKPHSVFAR DGNDLVVTQK ISLAEALTGY TVHLTTLDGR NLTIPINNVI
301: HPNYEEVVPR EGMPLPKDPS KKGNLRIKFN IKFPTRLTDE QKAGIRKLFN NA
Best Arabidopsis Sequence Match ( AT2G20560.1 )
(BLAST)
001: MGVDYYKVLQ VDRSASDDDL KKAYRKLAMK WHPDKNPNNK KDAEAMFKQI SEAYEVLSDP QKKAVYDQYG EEGLKGNVPP PDAGGATYFS TGDGPTSFRF
101: NPRNADDIFA EFFGFSSPFG GGRGGTRFSS SMFGDNMFAS FGEGGGGGGG SMHHGGARKA APIENKLPCS LEDLYKGTTK KMRISREIAD VSGKTMQVEE
201: ILTIDVKPGW KKGTKITFPE KGNEQPGVIP ADLVFIIDEK PHPVFTREGN DLIVTQKISL VEALTGYTVN LTTLDGRRLT IPVTNVVHPE YEEVVPKEGM
301: PLQKDQTKRG NLRIKFNIKF PTRLTSEQKT GVKKLLG
Arabidopsis Description
At2g20560/T13C7.15 [Source:UniProtKB/TrEMBL;Acc:Q9SIL3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.