CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88624	Soybean	nucleus	95.85	95.85
KRH65726	Soybean	nucleus	95.55	95.55
KRH00241	Soybean	cytosol, nucleus	85.16	84.66
Solyc09g005350.2.1	Tomato	nucleus, plastid	83.09	82.35
PGSC0003DMT400059397	Potato	cytosol	83.09	82.35
KRH49388	Soybean	cytosol	84.27	82.08
Bra029729.1-P	Field mustard	nucleus	77.45	79.57
CDY64940	Canola	nucleus	77.45	79.57
AT3G08910.1	Thale cress	nucleus	75.96	79.26
CDY22173	Canola	cytosol	78.64	78.87
CDY68815	Canola	cytoskeleton, cytosol, nucleus	78.04	78.74
CDY58657	Canola	cytosol	75.96	78.53
Bra001337.1-P	Field mustard	cytoskeleton, cytosol, nucleus	77.74	78.44
CDY07893	Canola	cytosol	74.78	78.02
Bra040063.1-P	Field mustard	cytoskeleton, cytosol, nucleus	75.37	77.91
CDY27963	Canola	cytosol	75.67	77.51
AT5G01390.1	Thale cress	cytosol	74.48	74.93
KRH25647	Soybean	nucleus	73.0	70.49
KRH10937	Soybean	cytosol	70.33	69.91
KRH55895	Soybean	endoplasmic reticulum, nucleus	72.7	69.6
KRH21363	Soybean	cytosol	62.61	68.51
KRH12423	Soybean	cytoskeleton, cytosol, nucleus	51.63	66.16
EES17644	Sorghum	cytosol	59.05	63.58
KRH61858	Soybean	cytosol	26.41	62.68
Zm00001d010958_P001	Maize	cytosol	59.64	61.66
KRH10940	Soybean	cytosol	60.83	61.01
KRH21362	Soybean	cytosol	61.13	60.59
KRH63415	Soybean	cytosol	26.11	59.86
TraesCS1A01G070300.1	Wheat	cytosol	59.94	59.59
TraesCS1B01G088700.1	Wheat	cytosol	60.24	58.5
TraesCS1D01G072800.1	Wheat	nucleus	59.64	58.43
KRH69388	Soybean	cytosol	47.77	58.33
KRH52529	Soybean	cytosol	56.38	58.28
KRH45833	Soybean	cytosol	48.37	56.4
KRH74747	Soybean	cytosol	46.29	56.32
KRG99186	Soybean	cytosol	47.77	55.71
KRH54495	Soybean	nucleus	56.68	54.42
KRH61857	Soybean	cytosol, nucleus	18.69	54.31
HORVU1Hr1G015040.2	Barley	plastid	60.83	53.52
GSMUA_Achr6P15600_001	Banana	cytosol	69.14	52.71
KRH63417	Soybean	nucleus	30.27	50.25
KRH40259	Soybean	cytosol	22.85	48.43
KRH60063	Soybean	endoplasmic reticulum, golgi	27.6	46.97
HORVU1Hr1G015060.2	Barley	plastid	32.64	38.6
KRG96505	Soybean	nucleus	36.5	35.86
KRH68242	Soybean	endoplasmic reticulum	36.2	35.57
KRH55068	Soybean	cytosol	13.95	34.31
KRH69236	Soybean	endoplasmic reticulum	33.83	32.95
KRH10414	Soybean	cytosol	33.83	29.92
KRH25334	Soybean	nucleus	36.2	29.26
KRG88903	Soybean	nucleus	36.2	29.26
KRH26709	Soybean	nucleus	35.31	28.54
KRH22611	Soybean	nucleus	35.31	28.54
KRH48754	Soybean	endoplasmic reticulum	35.31	28.33
KRH66593	Soybean	endoplasmic reticulum	34.72	27.86
KRH44054	Soybean	cytosol	31.45	27.6
KRH64663	Soybean	plastid	28.19	26.84
KRG90292	Soybean	cytosol, nucleus, plastid	20.77	24.48
KRG97564	Soybean	plastid	28.78	22.05
KRH59311	Soybean	plastid	28.19	21.94
KRH31310	Soybean	nucleus, plastid	28.49	21.82
KRH43163	Soybean	plastid	27.6	21.28
KRH09715	Soybean	nucleus, plastid	29.08	19.88
KRH27511	Soybean	mitochondrion	26.11	19.86
KRH36456	Soybean	mitochondrion	26.11	19.86
KRH44477	Soybean	plastid	25.52	19.37
KRH43470	Soybean	mitochondrion	24.93	18.92
KRH13903	Soybean	mitochondrion	24.33	18.47
KRH48662	Soybean	nucleus, plastid	27.3	17.52
KRH72418	Soybean	mitochondrion	24.33	17.48
KRH16800	Soybean	mitochondrion	24.33	17.48
KRH23590	Soybean	nucleus	17.51	16.53

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100794182	MapMan:19.1.5.2	Gene3D:2.60.260.20	EMBL:ACUP02000535	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_01G121300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	UniProt:I1J7F3
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH75968	ProteinID:KRH75968	ProteinID:KRH75968.1
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR24078
PANTHER:PTHR24078:SF298	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	UniParc:UPI0001BA8D49	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:41795226..41800023

Molecular Weight (calculated)

37190.3 Da

IEP (calculated)

9.663

GRAVY (calculated)

-0.607

Length

337 amino acids

Sequence
(BLAST)

001: MGVDYYKLLQ VDRNVSDEDL KKAYRKLAMK WHPDKNPNNK RDAEAKFKQI SEAYDVLSDP QKRGVYDQYG EEGLKGQVPP PGAGGFSGGS DGGPTMFRFN
101: PRSADDIFSE FFGFSSPYGM GDMGGRAGPS GYPRFADDLF ASFSRSAAGE GPGNVLRKSA PIEKTLQCSL EDLYKGTTKK MKISRDVIDA SGRPITVEEI
201: LTIEIKPGWK RGTKVTFPEK GNEQRGVIPS DLVFIIDEKP HGVFKRDGND LVVTQKISLV EALTSYTGQL TTLDGRNLTV STNSVISPIY EEVIKGEGMP
301: IPKEPSKKGN LRIKFNIKFP SRLTSEQKTG IKRLLTS

Best Arabidopsis Sequence Match ( AT3G08910.1 )
(BLAST)

001: MGVDYYKVLQ VDRNAKDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAIYDQYG EEGLTSQAPP PGAGGGFSDG GASFRFNGRS
101: ADDIFSEFFG FTRPFGDSRG AGPSNGFRFA EDVFSSNVVP PRKAAPIERQ LPCSLEDLYK GVSKKMKISR DVLDSSGRPT TVEEILTIEI KPGWKKGTKI
201: TFPEKGNEQR GIIPSDLVFI VDEKPHAVFK RDGNDLVMTQ KIPLVEALTG YTAQVSTLDG RSVTVPINNV ISPSYEEVVK GEGMPIPKDP SKKGNLRIKF
301: TVKFPSRLTT EQKSGIKRMF SSS

Arabidopsis Description

At3g08910 [Source:UniProtKB/TrEMBL;Acc:Q9SR91]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.