Factsheet for TraesCS5B01G428000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

golgi: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G434100.1	Wheat	nucleus	100.0	100.0
TraesCS5A01G426100.1	Wheat	nucleus	99.76	99.76
HORVU5Hr1G103680.1	Barley	cytosol	99.29	99.29
KXG37403	Sorghum	cytosol	91.69	92.34
Os03t0787300-01	Rice	plasma membrane	90.5	91.37
Zm00001d034368_P001	Maize	extracellular, plasma membrane	90.5	91.15
Zm00001d013111_P001	Maize	extracellular, plasma membrane	89.79	90.65
KRH25334	Soybean	nucleus	85.51	86.33
KRH26709	Soybean	nucleus	85.51	86.33
KRG88903	Soybean	nucleus	85.27	86.09
KRH22611	Soybean	nucleus	85.04	85.85
VIT_06s0080g01230.t01	Wine grape	cytosol	84.8	85.61
VIT_13s0073g00560.t01	Wine grape	cytosol	84.09	85.1
Zm00001d006666_P001	Maize	nucleus	58.91	84.64
Solyc04g009770.2.1	Tomato	nucleus	83.85	84.45
Zm00001d048538_P001	Maize	nucleus	65.08	84.31
TraesCS5B01G374900.1	Wheat	nucleus	84.09	84.09
PGSC0003DMT400065401	Potato	nucleus	83.37	83.77
Zm00001d006230_P001	Maize	cytosol	55.58	80.69
Zm00001d045645_P001	Maize	cytosol	50.83	80.45
HORVU6Hr1G065410.3	Barley	cytosol, mitochondrion	55.11	79.45
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	34.68	79.35
Zm00001d006563_P001	Maize	mitochondrion	49.17	76.1
TraesCS6B01G274600.1	Wheat	nucleus	73.63	72.94
Zm00001d026185_P001	Maize	endoplasmic reticulum	83.37	69.78
Zm00001d004840_P001	Maize	mitochondrion	56.29	69.1
TraesCS1B01G125100.1	Wheat	nucleus	32.3	38.86
TraesCS7B01G188900.2	Wheat	cytosol	29.69	36.13
TraesCS3B01G192300.1	Wheat	cytosol	28.98	35.36
TraesCS6B01G115000.1	Wheat	cytosol	27.79	34.72
TraesCS3B01G587800.1	Wheat	cytosol	26.6	34.67
TraesCS1B01G423600.1	Wheat	cytosol	29.93	33.33
TraesCS1B01G088700.1	Wheat	cytosol	27.08	32.85
TraesCS3B01G418500.1	Wheat	cytosol	19.71	25.54
TraesCS1B01G278300.1	Wheat	cytosol	19.0	24.46
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	24.23	24.23
TraesCS6B01G410600.1	Wheat	plastid	28.03	23.94
TraesCS5B01G115900.1	Wheat	plastid	27.32	23.81
TraesCS4B01G241700.1	Wheat	plastid	27.32	21.5
TraesCS7B01G081600.2	Wheat	mitochondrion	23.52	20.58

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.5.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	ncoils:Coil	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom
InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152
PFAM:PF00226	PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS51188	PANTHER:PTHR43888	PANTHER:PTHR43888:SF15	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493
SUPFAM:SSF57938	EnsemblPlantsGene:TraesCS5B01G428000	EnsemblPlants:TraesCS5B01G428000.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:603954037..603956423

Molecular Weight (calculated)

46839.5 Da

IEP (calculated)

5.720

GRAVY (calculated)

-0.799

Length

421 amino acids

Sequence
(BLAST)

001: MFGRGPPKKS DSTRYYEILG VPKDASQDDL KKAYRKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGMHD PFDIFQSFFG
101: GGGNPFGGGG SSRGRRQRRG EDVVHPLKVS LEELYNGTSK KLSLARNVLC SKCNGKGSKS GASMKCAGCQ GAGYKVQIRQ LGPGMIQQMQ QPCNECRGSG
201: ETISDKDRCG QCKGEKVVHE KKVLEVVVEK GMQHGQKITF PGEADEAPDT VTGDIIFVLQ QKEHPKFKRK GDDLFYEHTL TLTEALCGFQ YVLAHLDGRQ
301: LLIKSNPGEV VKPDSFKAIN DEGMPMYQRP FMKGKLYIHF TVDFPDSLSL DQCKALETVL PPKPASQYTD MELDECEETM AYDIDIEEEM RRRQQQQAQE
401: AYDEDEDMPG GGGQRVQCAQ Q

Best Arabidopsis Sequence Match ( AT5G22060.1 )
(BLAST)

001: MFGRGPSRKS DNTKFYEILG VPKTAAPEDL KKAYKKAAIK NHPDKGGDPE KFKELAQAYE VLSDPEKREI YDQYGEDALK EGMGGGGGGH DPFDIFSSFF
101: GSGGHPFGSH SRGRRQRRGE DVVHPLKVSL EDVYLGTTKK LSLSRKALCS KCNGKGSKSG ASMKCGGCQG SGMKISIRQF GPGMMQQVQH ACNDCKGTGE
201: TINDRDRCPQ CKGEKVVSEK KVLEVNVEKG MQHNQKITFS GQADEAPDTV TGDIVFVIQQ KEHPKFKRKG EDLFVEHTIS LTEALCGFQF VLTHLDKRQL
301: LIKSKPGEVV KPDSYKAISD EGMPIYQRPF MKGKLYIHFT VEFPESLSPD QTKAIEAVLP KPTKAAISDM EIDDCEETTL HDVNIEDEMK RKAQAQREAY
401: DDDEEDHPGG AQRVQCAQQ

Arabidopsis Description

ATJ2At5g22060 [Source:UniProtKB/TrEMBL;Acc:Q0V7U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.