Factsheet for TraesCS5B01G115900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 18071923
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G115000.1	Wheat	plastid	82.61	96.14
TraesCS5D01G125500.1	Wheat	nucleus	99.38	89.22
Os05t0334400-01	Rice	mitochondrion, plastid	80.33	86.8
Os05t0334000-01	Rice	mitochondrion, plastid	80.33	86.8
Os05t0333500-01	Rice	mitochondrion, plastid	80.33	86.8
EES13204	Sorghum	plastid	79.3	85.49
HORVU5Hr1G037600.2	Barley	cytosol, nucleus	98.14	81.3
Solyc01g105340.2.1	Tomato	plastid	59.01	80.74
Zm00001d024635_P001	Maize	mitochondrion	79.09	77.48
Zm00001d047195_P001	Maize	mitochondrion	52.38	76.67
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	77.85	75.96
GSMUA_Achr1P15780_001	Banana	plastid	68.12	73.93
GSMUA_Achr3P00920_001	Banana	mitochondrion	68.94	73.67
PGSC0003DMT400032760	Potato	plastid	65.22	70.79
KRH59311	Soybean	plastid	62.32	69.52
KRH43163	Soybean	plastid	62.53	69.11
KRH31310	Soybean	nucleus, plastid	62.53	68.64
KRG97564	Soybean	plastid	62.11	68.18
CDX89453	Canola	plastid	61.9	66.15
Bra030245.1-P	Field mustard	plastid	61.7	65.93
CDY25588	Canola	plastid	61.7	65.64
AT4G39960.1	Thale cress	mitochondrion, plastid	60.66	65.55
VIT_00s0324g00040.t01	Wine grape	plastid	65.01	65.28
AT2G22360.1	Thale cress	plastid	59.63	65.16
GSMUA_Achr4P20410_001	Banana	cytosol	67.91	62.48
CDY63891	Canola	cytosol	60.25	59.88
CDX69371	Canola	mitochondrion	59.83	57.68
Bra011820.1-P	Field mustard	cytosol	60.04	54.82
TraesCS6B01G410600.1	Wheat	plastid	43.69	42.8
TraesCS5B01G117900.1	Wheat	mitochondrion, plastid	28.36	32.54
TraesCS4B01G241700.1	Wheat	plastid	34.37	31.03
TraesCS7B01G188900.2	Wheat	cytosol	21.74	30.35
TraesCS3B01G192300.1	Wheat	cytosol	20.91	29.28
TraesCS3B01G587800.1	Wheat	cytosol	19.25	28.79
TraesCS6B01G115000.1	Wheat	cytosol	19.88	28.49
TraesCS1B01G423600.1	Wheat	cytosol	22.15	28.31
TraesCS1B01G125100.1	Wheat	nucleus	20.29	28.0
TraesCS5B01G428000.1	Wheat	nucleus	23.81	27.32
TraesCS5B01G374900.1	Wheat	nucleus	23.6	27.08
TraesCS7B01G081600.2	Wheat	mitochondrion	26.71	26.82
TraesCS1B01G088700.1	Wheat	cytosol	19.25	26.8
TraesCS6B01G274600.1	Wheat	nucleus	22.15	25.18
TraesCS1B01G278300.1	Wheat	cytosol	14.08	20.8
TraesCS3B01G418500.1	Wheat	cytosol	13.04	19.38

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf
InterPro:IPR001305	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	PFAM:PF00226
PFAM:PF00684	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188
PANTHER:PTHR43096	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TIGRFAMs:TIGR02349
EnsemblPlantsGene:TraesCS5B01G115900	EnsemblPlants:TraesCS5B01G115900.1	TIGR:cd06257	TIGR:cd10719	TIGR:cd10747	SEG:seg

Description

No Description!

Coordinates

chr5B:+:196466045..196471228

Molecular Weight (calculated)

51809.7 Da

IEP (calculated)

10.217

GRAVY (calculated)

-0.498

Length

483 amino acids

Sequence
(BLAST)

001: MLHPVHRLPA TPSRPAVHPH VSPAPPSLRL RRVAGTRPTT PVVCCSGFVG SLPVANQGSE FEPRSRSIYG GRGSVAIDPR FMASKNSTRG RGKHLASPSA
101: SLNHAPSPRF RHRRGSRFIV RAESDFYSVL GVSRNASKSE IKSAYRKLAR SYHPDVNKEP GAEQKFKDIS NAYEVLSDDE KRAIYDKYGE AGLKGSGMGT
201: GDYSNPFDLF ESLFEGFGGM GGMGGGRAAR NRPMQGDDES YNLVLNFKEA VFGVEKEIEI TRLEGCNTCD GSGAKPGTKP TTCKTCGGQG QVVSSTRTPL
301: GIFQQVSTCN TCGGTGEFST PCKTCGGDGR VRKTKRISLK VPAGVDSGSR LRVRSEGNAG RRGGPPGDLY VFIDVLSDSV LKRDGTSILY TCKVSYIDAI
401: LGTTVKVPTV DGVVDLKIPS GTQPGTTLVM SKKGVPLLGK SNARGDQLVR VQVEIPKRLS SDERKLIEEL ANLNKAEPAN SRR

Best Arabidopsis Sequence Match ( AT2G22360.1 )
(BLAST)

001: MAIIQLGSTC VAQWSIRPQF AVRAYYPSRI ESTRHQNSSS QVNCLGASKS SMFSHGSLPF LSMTGMSRNM HPPRRGSRFT VRADADYYSV LGVSKNATKA
101: EIKSAYRKLA RNYHPDVNKD PGAEEKFKEI SNAYEVLSDD EKKSLYDRYG EAGLKGAAGF GNGDFSNPFD LFDSLFEGFG GGMGRGSRSR AVDGQDEYYT
201: LILNFKEAVF GMEKEIEISR LESCGTCEGS GAKPGTKPTK CTTCGGQGQV VSAARTPLGV FQQVMTCSSC NGTGEISTPC GTCSGDGRVR KTKRISLKVP
301: AGVDSGSRLR VRGEGNAGKR GGSPGDLFVV IEVIPDPILK RDDTNILYTC KISYIDAILG TTLKVPTVDG TVDLKVPAGT QPSTTLVMAK KGVPVLNKSN
401: MRGDQLVRVQ VEIPKRLSKE EKKLIEELAD MSKNKTANST SR

Arabidopsis Description

DJA6Chaperone protein dnaJ A6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJZ7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.