Factsheet for Zm00001d028256_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92981	Sorghum	plastid	90.52	90.35
TraesCS4D01G241300.2	Wheat	plastid	67.84	67.59
TraesCS4A01G064300.2	Wheat	plastid	67.66	67.41
TraesCS4B01G241700.1	Wheat	plastid	66.73	67.1
HORVU4Hr1G066920.5	Barley	mitochondrion	67.47	63.91
VIT_17s0000g02030.t01	Wine grape	plastid	42.94	48.02
Bra022249.1-P	Field mustard	cytosol, mitochondrion, plastid	39.41	46.29
KRH48662	Soybean	nucleus, plastid	43.49	44.57
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	43.87	43.3
CDX92166	Canola	plastid	40.33	42.97
CDX95817	Canola	plastid	40.15	42.94
AT3G17830.1	Thale cress	plastid	40.52	42.17
Solyc03g118500.2.1	Tomato	plastid	41.45	41.92
PGSC0003DMT400036786	Potato	plastid	41.08	41.54
Zm00001d024635_P001	Maize	mitochondrion	31.78	34.69
Zm00001d047195_P001	Maize	mitochondrion	21.19	34.55
Zm00001d049583_P003	Maize	cytosol, mitochondrion, nucleus, plastid	31.6	34.34
Zm00001d018413_P003	Maize	mitochondrion	32.71	30.93
Zm00001d052001_P002	Maize	plastid	33.27	29.15
Zm00001d035974_P001	Maize	mitochondrion	23.05	28.9
Zm00001d035975_P001	Maize	mitochondrion	22.86	28.67
Zm00001d009556_P001	Maize	cytoskeleton, cytosol, nucleus	18.03	27.64
Zm00001d024527_P001	Maize	cytosol	17.84	27.59
Zm00001d039000_P001	Maize	mitochondrion	18.03	26.8
Zm00001d010958_P001	Maize	cytosol	16.17	26.69
Zm00001d023537_P002	Maize	mitochondrion	20.63	26.12
Zm00001d032347_P001	Maize	cytosol	16.17	25.51
Zm00001d009027_P001	Maize	cytosol	15.61	25.0
Zm00001d034368_P001	Maize	extracellular, plasma membrane	19.33	24.88
Zm00001d016440_P001	Maize	cytosol	15.99	24.86
Zm00001d013111_P001	Maize	extracellular, plasma membrane	18.96	24.46
Zm00001d009783_P004	Maize	mitochondrion	15.8	24.29
Zm00001d037586_P001	Maize	endoplasmic reticulum	16.17	23.71
Zm00001d017476_P001	Maize	plasma membrane	18.22	23.22
Zm00001d033210_P002	Maize	nucleus	17.47	22.43
Zm00001d048538_P001	Maize	nucleus	13.01	21.54
Zm00001d013669_P002	Maize	cytosol	17.66	21.16
Zm00001d009210_P001	Maize	endoplasmic reticulum	15.8	20.94
Zm00001d012242_P001	Maize	cytosol	12.08	20.57
Zm00001d044878_P002	Maize	mitochondrion	18.59	20.41
Zm00001d031357_P001	Maize	cytosol, nucleus, plastid	6.88	20.11
Zm00001d039259_P001	Maize	nucleus	15.8	19.72
Zm00001d053972_P001	Maize	cytosol, golgi, plasma membrane	15.43	19.58
Zm00001d006563_P001	Maize	mitochondrion	9.85	19.49
Zm00001d026185_P001	Maize	endoplasmic reticulum	17.1	18.29
Zm00001d038250_P001	Maize	cytosol	11.15	17.91
Zm00001d006230_P001	Maize	cytosol	9.48	17.59
Zm00001d004840_P001	Maize	mitochondrion	11.15	17.49
Zm00001d006666_P001	Maize	nucleus	9.48	17.41
Zm00001d042653_P001	Maize	plastid	12.64	17.0
Zm00001d045645_P001	Maize	cytosol	7.25	14.66

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.4.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	UniProt:A0A1D6JTM6	InterPro:DnaJ
InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009507	GO:GO:0009536
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0031072	GO:GO:0046872
GO:GO:0051082	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	HAMAP:MF_01152	ProteinID:ONL95206.1	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
PANTHER:PTHR43096:SF26	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	TMHMM:TMhelix
UniParc:UPI00084497BC	EnsemblPlantsGene:Zm00001d028256	EnsemblPlants:Zm00001d028256_P002	EnsemblPlants:Zm00001d028256_T002	SEG:seg	:

Description

Molecular chaperone Hsp40/DnaJ family protein

Coordinates

chr1:+:28086288..28102837

Molecular Weight (calculated)

59824.2 Da

IEP (calculated)

9.416

GRAVY (calculated)

-0.488

Length

538 amino acids

Sequence
(BLAST)

001: MSATVFFLPA NPSSTASPAN TLRQLTPAST SGKLHFAAFP LRLPRHACAR TYRSAAFGRG SPVAGRREKD YYATLNIRRD STLQEIKSAY RILARKYHPD
101: MNKSPEAEEK FKEISAAYEV LSDQDKRSLY DRFGEEGLSG DYRNGDIGTH GIDPYELFNA FFGSSDKLFG DSMGSGGFHY SAEAKDNRAL NISYNLLLSF
201: EESILGGKRE INVFRHETCG TCHGTGAKCS NDITECTRCR GQGRLMKTQR TPFGIVSQIS SCLNCEGSGK VITEHCTECY GSGRVQIERI IKVDIPGGID
301: DGSTIRISGG GNVDKQRGAS GDLYIFVRVN KKQGIHRDGL NLYSDASVDY TDVILGTTVK VETIEGLKDL HIPPGTQPGE NLKFSQLGVP DIKKPNVRGD
401: HYFMIKVKIP KSISGQERLL VEELAALKKA QNISVPEPTK IENFRERNHH PSAKRRSFWG RVWNFFRDDK GDKRFASISV QPIIPGWNSC RGTDTAVPLL
501: LKGFLMTAIF LFVIRSKLRY TGKRIDRPTQ AEIPVEPE

Best Arabidopsis Sequence Match ( AT3G17830.1 )
(BLAST)

001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET

Arabidopsis Description

At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.