CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67525
CDX76646
CDX76770
CDX77423
CDX79726
CDX84809
CDX89142
CDY06347
CDY11430
CDY13371
CDY22648
CDY23972
CDY35374
CDY46766
CDY55710
CDY56283
CDY63310
CDY63497

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62600.1	CDY06347	AT1G09080.1	19763086
AT3G62600.1	CDY22648	AT1G09080.1	19763086
AT3G62600.1	CDX76770	AT2G25110.1	19763086
AT3G62600.1	CDY35374	AT2G25110.1	19763086
AT3G62600.1	CDY55710	AT2G25110.1	19763086
AT3G62600.1	CDY56283	AT2G25110.1	19763086
AT3G62600.1	CDX76646	AT3G62600.1	19763086
AT3G62600.1	CDX89142	AT3G62600.1	19763086
AT3G62600.1	CDY11430	AT3G62600.1	19763086
AT3G62600.1	CDY63310	AT3G62600.1	19763086
AT3G62600.1	CDX67525	AT5G28540.1	19763086
AT3G62600.1	CDX77423	AT5G28540.1	19763086
AT3G62600.1	CDX79726	AT5G28540.1	19763086
AT3G62600.1	CDX84809	AT5G28540.1	19763086
AT3G62600.1	CDY13371	AT5G28540.1	19763086
AT3G62600.1	CDY23972	AT5G28540.1	19763086
AT3G62600.1	CDY46766	AT5G28540.1	19763086
AT3G62600.1	CDY63497	AT5G28540.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89142	Canola	endoplasmic reticulum	98.85	98.85
AT3G62600.1	Thale cress	endoplasmic reticulum, golgi	95.1	95.38
CDY59898	Canola	endoplasmic reticulum, golgi	94.24	94.24
CDY11430	Canola	golgi	93.66	93.93
CDX76646	Canola	golgi	93.37	93.64
CDX67894	Canola	endoplasmic reticulum, golgi	86.74	92.05
VIT_07s0005g01220.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	79.83	80.29
Solyc01g079610.2.1	Tomato	nucleus	79.25	79.71
PGSC0003DMT400023249	Potato	endoplasmic reticulum, golgi	79.25	79.71
TraesCS1B01G125100.1	Wheat	nucleus	76.08	75.43
TraesCS1D01G107200.1	Wheat	nucleus	75.79	75.14
TraesCS1A01G099300.1	Wheat	nucleus	75.5	74.86
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	73.78	74.42
EES17752	Sorghum	endoplasmic reticulum, golgi	74.64	74.0
Os05t0156500-01	Rice	cytosol, nucleus	30.84	73.29
Zm00001d009783_P004	Maize	mitochondrion	72.33	71.71
Zm00001d037586_P001	Maize	endoplasmic reticulum	73.78	69.75
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	74.93	69.71
KRH55068	Soybean	cytosol	25.65	64.96
KXG32445	Sorghum	endoplasmic reticulum	64.27	64.45
HORVU1Hr1G022990.1	Barley	cytosol	74.06	60.47
Zm00001d009210_P001	Maize	endoplasmic reticulum	59.37	50.74
Bra014400.1-P	Field mustard	golgi	95.1	49.4
CDY58657	Canola	cytosol	35.16	37.42
CDY64940	Canola	nucleus	35.16	37.2
CDY07893	Canola	cytosol	34.58	37.15
CDY27963	Canola	cytosol	34.87	36.78
CDY68815	Canola	cytoskeleton, cytosol, nucleus	34.87	36.23
CDY35188	Canola	cytosol	33.72	36.11
CDY20944	Canola	cytosol	31.7	36.07
CDY22173	Canola	cytosol	34.58	35.71
CDY29908	Canola	cytoskeleton, cytosol, nucleus	32.56	35.2
CDX92876	Canola	cytoskeleton, cytosol, nucleus	31.99	34.91
CDX88188	Canola	cytosol	32.28	34.89
CDX80523	Canola	cytosol	32.28	34.89
CDY65077	Canola	cytosol	33.14	34.23
CDY20637	Canola	cytosol	31.41	34.06
CDY13869	Canola	cytosol	33.14	34.02
CDY05498	Canola	cytosol	32.56	33.93
CDY54902	Canola	cytosol	32.56	33.93
CDX97443	Canola	cytosol	29.39	33.89
CDY38388	Canola	cytosol	33.14	33.63
CDY30900	Canola	cytoskeleton, cytosol, nucleus	32.56	33.53
CDY45143	Canola	cytoskeleton, cytosol, nucleus	31.41	32.93
CDY37986	Canola	cytosol	22.19	32.63
CDX83026	Canola	cytosol	30.84	32.62
CDY36915	Canola	cytosol	30.55	31.74
CDX68447	Canola	cytosol	30.55	30.9
CDY65546	Canola	nucleus	37.18	30.64
CDX92386	Canola	nucleus	36.89	30.33
CDX92385	Canola	nucleus	36.89	30.33
CDY09117	Canola	nucleus	36.6	30.02
CDX88812	Canola	nucleus	34.87	29.66
CDY21803	Canola	nucleus	28.82	29.59
CDX70980	Canola	nucleus	34.58	29.48
CDY24146	Canola	cytosol	30.26	27.85
CDY16617	Canola	nucleus	13.54	22.6
CDY45921	Canola	mitochondrion	27.67	21.48
CDY35761	Canola	mitochondrion	27.38	21.25
CDX89453	Canola	plastid	27.67	21.24
CDY25588	Canola	plastid	27.67	21.15
CDY66166	Canola	plastid	21.04	20.98
CDY14974	Canola	nucleus	20.75	20.81
CDY54516	Canola	mitochondrion	27.09	20.75
CDX86330	Canola	mitochondrion	27.09	20.61
CDX87288	Canola	plastid	29.39	20.36
CDY58774	Canola	plastid	29.11	20.2
CDY63891	Canola	cytosol	27.67	19.75
CDX69371	Canola	mitochondrion	27.38	18.96
CDX90134	Canola	mitochondrion	23.05	18.6
CDY20977	Canola	nucleus	19.31	16.63
CDY20589	Canola	nucleus	18.73	16.54
CDY35719	Canola	mitochondrion	23.34	16.3
CDX95817	Canola	plastid	23.34	16.1
CDX97927	Canola	nucleus	19.6	15.7
CDX92166	Canola	plastid	22.77	15.64
CDY67277	Canola	cytosol, nucleus, plastid	19.6	15.63

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.1.2.1.2	Gene3D:2.60.260.20	GO:A0A078JDZ8	UniProt:A0A078JDZ8	EnsemblPlants:CDY63310
ProteinID:CDY63310	ProteinID:CDY63310.1	ncoils:Coil	InterPro:DnaJ_C	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	EnsemblPlantsGene:GSBRNA2T00039166001	InterPro:HSP40/DnaJ_pept-bd	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR43888
PANTHER:PTHR43888:SF14	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SignalP:SignalP-TM	UniParc:UPI0004EB8E32
SEG:seg	:	:	:	:	:

Description

BnaC04g54960DBnaC04g54960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JDZ8]

Coordinates

chrLK034278:-:21455..23798

Molecular Weight (calculated)

39112.6 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.631

Length

347 amino acids

Sequence
(BLAST)

001: MAIRWSELCI VLFALSYSIC VIAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAD INNAYEVLSD EEKREIYNKY GEEGLKQHAA
101: SGGRGGGGGG MNMQDIFSQF FGGGGSREEE EKVVKGDDVI VELEATLEDL YMGGSVKVWR EKNVIKPAPG KRKCNCRNEV YHRQVGPGMF QQMTEQVCDK
201: CPNVKYEREG YFVTVDIEKG MKDGEEVSFY EDGEPILDGD PGDLKFRIKT APHARFRRDG NDLHMTVNIT LVEALVGFEK SFKQLDDHEV DIGSKGITKP
301: KEVKKFKGEG MPLHYSTKKG NLFVTFEVLF PSSLTDDQKK KIKQVLA

Best Arabidopsis Sequence Match ( AT3G62600.1 )
(BLAST)

001: MAIRWSELCI VLFALSYAIC VLAGKSYYDV LQVPKGASDE QIKRAYRKLA LKYHPDKNQG NEEATRKFAE INNAYEVLSD EEKREIYNKY GEEGLKQFSA
101: NGGRGGGGGG MNMQDIFSSF FGGGSMEEEE KVVKGDDVIV ELEATLEDLY MGGSMKVWRE KNVIKPAPGK RKCNCRNEVY HRQIGPGMFQ QMTEQVCDKC
201: PNVKYEREGY FVTVDIEKGM KDGEEVSFYE DGEPILDGDP GDLKFRIRTA PHARFRRDGN DLHMNVNITL VEALVGFEKS FKHLDDHEVD ISSKGITKPK
301: EVKKFKGEGM PLHYSTKKGN LFVTFEVLFP SSLTDDQKKK IKEVFA

Arabidopsis Description

ERDJ3BDnaJ protein ERDJ3B [Source:UniProtKB/Swiss-Prot;Acc:Q9LZK5]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.