Factsheet for GSMUA_Achr4P12400_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11580_001	Banana	mitochondrion	68.59	71.02
GSMUA_Achr3P00410_001	Banana	mitochondrion	60.9	63.33
EER89093	Sorghum	mitochondrion, plastid	54.7	58.85
Zm00001d035975_P001	Maize	mitochondrion	53.85	58.74
Zm00001d035974_P001	Maize	mitochondrion	53.42	58.28
TraesCS7D01G045900.2	Wheat	mitochondrion	49.15	57.64
Os06t0116800-01	Rice	mitochondrion	54.27	57.47
VIT_13s0064g01360.t01	Wine grape	mitochondrion	55.34	57.43
TraesCS7A01G051000.1	Wheat	mitochondrion	52.35	55.81
HORVU7Hr1G009230.8	Barley	plastid	51.28	53.93
KRH27511	Soybean	mitochondrion	49.79	52.6
KRH36456	Soybean	mitochondrion	49.36	52.14
Bra020721.1-P	Field mustard	mitochondrion	49.57	51.9
CDY45921	Canola	mitochondrion	49.57	51.9
CDY35761	Canola	mitochondrion	49.57	51.9
AT5G48030.1	Thale cress	mitochondrion	49.15	50.44
CDY54516	Canola	mitochondrion	48.72	50.33
Bra037514.1-P	Field mustard	mitochondrion	48.5	50.22
PGSC0003DMT400064990	Potato	mitochondrion	47.44	50.11
Solyc01g086740.2.1	Tomato	mitochondrion	47.22	49.89
CDX86330	Canola	mitochondrion	48.5	49.78
KRH43470	Soybean	mitochondrion	47.22	49.77
KRH13903	Soybean	mitochondrion	47.01	49.55
GSMUA_Achr1P15780_001	Banana	plastid	28.21	29.66
GSMUA_Achr3P00920_001	Banana	mitochondrion	28.21	29.2
GSMUA_Achr6P02160_001	Banana	mitochondrion	29.49	29.18
GSMUA_AchrUn_...	Banana	cytosol	9.19	28.67
GSMUA_Achr1P01630_001	Banana	cytosol	14.1	27.85
GSMUA_AchrUn_...	Banana	cytosol	17.73	27.76
GSMUA_Achr8P33890_001	Banana	endoplasmic reticulum	19.44	26.45
GSMUA_Achr3P15480_001	Banana	cytosol	16.45	26.37
GSMUA_Achr8P16030_001	Banana	cytosol	18.38	25.98
GSMUA_Achr6P13820_001	Banana	cytosol	9.4	25.73
GSMUA_Achr4P20410_001	Banana	cytosol	28.42	25.33
GSMUA_Achr11P...	Banana	plastid	26.28	25.1
GSMUA_Achr4P12330_001	Banana	nucleus	17.52	25.0
GSMUA_Achr11P...	Banana	cytosol	20.09	24.67
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	19.23	24.13
GSMUA_Achr8P11020_001	Banana	nucleus	20.51	24.0
GSMUA_Achr2P19740_001	Banana	cytosol	16.24	23.6
GSMUA_Achr9P23300_001	Banana	cytosol	17.09	23.26
GSMUA_AchrUn_...	Banana	cytosol	16.03	23.22
GSMUA_Achr6P29960_001	Banana	nucleus	20.51	23.19
GSMUA_Achr4P31390_001	Banana	cytosol	20.51	23.08
GSMUA_Achr4P22790_001	Banana	cytosol	20.51	22.97
GSMUA_Achr7P01290_001	Banana	nucleus	20.3	22.78
GSMUA_Achr9P25940_001	Banana	nucleus	20.3	22.78
GSMUA_Achr11P...	Banana	cytosol	17.73	22.19
GSMUA_Achr7P03030_001	Banana	cytosol	13.89	20.44
GSMUA_Achr6P15600_001	Banana	cytosol	19.02	20.14
GSMUA_Achr9P29030_001	Banana	mitochondrion, plastid	23.29	20.0
GSMUA_Achr8P32540_001	Banana	mitochondrion	7.48	12.59

Protein Annotations

Gene3D:1.10.287.110	MapMan:19.1.3.2	Gene3D:2.10.230.10	Gene3D:2.60.260.20	InterPro:DnaJ	InterPro:DnaJ_C
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006457	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628
GO:GO:0009987	GO:GO:0031072	GO:GO:0046872	GO:GO:0051082	EnsemblPlantsGene:GSMUA_Achr4G12400_001	EnsemblPlants:GSMUA_Achr4P12400_001
EnsemblPlants:GSMUA_Achr4T12400_001	InterPro:HSP40/DnaJ_pept-bd	InterPro:HSP_DnaJ_Cys-rich_dom	InterPro:HSP_DnaJ_Cys-rich_dom_sf	InterPro:IPR001305	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M0SNA5	HAMAP:MF_01152	PFAM:PF00226	PFAM:PF00684
PFAM:PF01556	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS51188	PANTHER:PTHR43096
PANTHER:PTHR43096:SF25	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF49493	SUPFAM:SSF57938	UniParc:UPI000295D520
SEG:seg	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_64.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G12400_001]

Coordinates

chr4:-:9187007..9196852

Molecular Weight (calculated)

50550.7 Da

IEP (calculated)

8.350

GRAVY (calculated)

-0.119

Length

468 amino acids

Sequence
(BLAST)

001: MRPHAARLGF WFARRSLGSK LLDESTTAAA LDGASARFVS WACSSSRSVV NENCEAANLT KGIINGAFQW HFVPSRSFHG TRSVSAKDYY DVLGVNKNAS
101: ASDIKKAYHA LAKKLHPDTN KDDAGAERKF QEVQHPYDVL KDEDKRRLYN QVGPDAFEQV AAGGGPGPNG PFGGAGFGNP FEDIFGGAGG FNDFFKSMFR
201: EREFGGQDVE VSLEISFMEA VQGCTKIVTF QTAVTCESCG GVGIPPGTKP ETCRACRGSG MTFMQNGSFR LQSTCSQCGG SGRTVKSLCK SCRGQRAVKG
301: VKSVKLDVVP GMPNLNSLLT VLSGGADPGG NQPGDLYVTI KVREDPVFRR EKEDIHVDAV LSVTQAILGG TIQVPTLTGD VVLKVKPGTQ PGQKVVLKGL
401: FYCILLLDFC MGGSLLLVID CKCYYLPCST ALLCLACLFV QQKDYFVLSH FYVREGNIGF IMKLNIRD

Best Arabidopsis Sequence Match ( AT5G48030.1 )
(BLAST)

001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ

Arabidopsis Description

GFA2GFA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UJR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.