Factsheet for Solyc03g117020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079610.2.1
Solyc03g117020.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	Solyc03g117020.2.1	AT2G25110.1	19763086
AT2G25110.1	Solyc01g079610.2.1	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	55.01	95.75
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	45.26	78.04
KRH52351	Soybean	endoplasmic reticulum	45.26	76.61
KRH61684	Soybean	endoplasmic reticulum	45.8	76.13
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	44.44	75.23
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	44.44	75.23
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	44.44	75.23
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	43.63	73.85
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	43.9	73.64
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	43.09	73.61
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	42.55	73.36
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	43.9	73.3
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	43.36	73.06
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	42.82	72.81
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	42.01	71.43
Os08t0278900-01	Rice	endoplasmic reticulum	41.73	70.97
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	41.73	70.97
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	40.11	68.2
EES15057	Sorghum	endoplasmic reticulum	39.3	67.13
TraesCS7B01G063900.1	Wheat	golgi	38.75	66.2
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	38.75	66.2
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	38.48	65.74
Zm00001d050430_P003	Maize	extracellular	38.48	65.74
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.02	65.16
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	28.73	55.79
GSMUA_Achr6P04030_001	Banana	cytosol	17.07	53.85
GSMUA_Achr3P00940_001	Banana	cytosol	10.84	50.63
HORVU7Hr1G079030.2	Barley	plastid	32.79	46.9

Protein Annotations

MapMan:19.1.1.2.1.3	Gene3D:2.80.10.50	GO:GO:0000030	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0097502
InterPro:GlyclTrfase_39-like	InterPro:IPR016093	UniProt:K4BLK4	InterPro:MIR_dom_sf	InterPro:MIR_motif	PFAM:PF02815
PFscan:PS50919	PANTHER:PTHR10050	SMART:SM00472	SUPFAM:SSF82109	EnsemblPlantsGene:Solyc03g117020.2	EnsemblPlants:Solyc03g117020.2.1
TMHMM:TMhelix	UniParc:UPI00027674D1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:66287681..66292507

Molecular Weight (calculated)

41278.3 Da

IEP (calculated)

10.257

GRAVY (calculated)

-0.431

Length

369 amino acids

Sequence
(BLAST)

001: MFLPVNFGKK TTIVFQSEVA RSPKVHVEKT DLLRLLLQRG IWNVKSLLHP KPKPKSPQRP SNIIGDWKVG NCLKFHIRIG TSSELHRASA KSFIVAPSGL
101: QQHQTLTRRK SAPPSTLNQA GASGSKRIVL KESSSESDLD LPFWQRTWFI VLLLLMAISF FGLALFLFLT LDSDYISTTP VSAASEGVQI TYGSAIKLMH
201: EKTKFRLHSH DVPYGSGSGQ QSVTGFPGVD DANSYWAVRS TDSSKQGDPI KSGSIIRLQH IKTRRWLHSH LHASPISGNM EVSCFGDDKE SDTGDYWRLE
301: IEGSGKTWRQ DQRIRLQHVD TGGYLHSHDK KYTRIAGGQQ EVCGVKEKRP DNVWLAAEGV YFPVTEKSK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.