Factsheet for GSMUA_Achr6P04030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P00940_001
GSMUA_Achr3P13410_001
GSMUA_Achr6P04010_001
GSMUA_Achr6P04030_001
GSMUA_Achr8P33890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	GSMUA_Achr3P00940_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr3P13410_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04010_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04030_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr11P...	AT3G62600.1	19763086
AT2G25110.1	GSMUA_Achr8P33890_001	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.27	31.31
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	53.85	29.72
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	52.99	28.97
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	52.99	28.7
KRH52351	Soybean	endoplasmic reticulum	52.99	28.44
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.99	28.18
Os08t0278900-01	Rice	endoplasmic reticulum	52.14	28.11
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	52.14	27.98
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	52.14	27.98
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	52.14	27.98
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	52.14	27.98
KRH61684	Soybean	endoplasmic reticulum	52.99	27.93
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	52.14	27.85
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	51.28	27.78
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	51.28	27.65
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	52.14	27.6
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	50.43	27.19
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	50.43	27.19
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	43.59	26.84
GSMUA_Achr3P00940_001	Banana	cytosol	13.68	20.25
HORVU7Hr1G079030.2	Barley	plastid	41.88	18.99
Solyc03g117020.2.1	Tomato	nucleus	53.85	17.07

Protein Annotations

EnsemblPlants:GSMUA_Achr6P04030_001	EnsemblPlants:GSMUA_Achr6T04030_001	EnsemblPlantsGene:GSMUA_Achr6G04030_001	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020
InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PFscan:PS50919	SEG:seg	SUPFAM:SSF82109
UniParc:UPI000296A493	UniProt:M0T401	MapMan:19.1.1.2.1.3	:	:	:

Description

Stromal cell-derived factor 2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G04030_001]

Coordinates

chr6:+:2775024..2777433

Molecular Weight (calculated)

12936.0 Da

IEP (calculated)

7.025

GRAVY (calculated)

-0.604

Length

117 amino acids

Sequence
(BLAST)

001: MHEKAKCRLH SHDVPYGSGS GQQSVTGSPD VDDSNSCWVI SRANLMPSKS GPGIWYAKLT VVKTQFWATQ CNLNHGSYSF YGGMLETICF GGDDGSDTGH
101: FWRLEIEGSG KTWRTRE

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.