Factsheet for GSMUA_Achr3P00940_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P00940_001
GSMUA_Achr3P13410_001
GSMUA_Achr6P04010_001
GSMUA_Achr6P04030_001
GSMUA_Achr8P33890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	GSMUA_Achr3P00940_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr3P13410_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04010_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04030_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr11P...	AT3G62600.1	19763086
AT2G25110.1	GSMUA_Achr8P33890_001	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	51.9	18.89
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	50.63	18.52
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	50.63	18.52
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	50.63	18.43
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	50.63	18.43
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	49.37	18.4
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	49.37	18.22
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	49.37	18.22
Os08t0278900-01	Rice	endoplasmic reticulum	49.37	17.97
KRH61684	Soybean	endoplasmic reticulum	49.37	17.57
KRH52351	Soybean	endoplasmic reticulum	48.1	17.43
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	45.57	16.51
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	45.57	16.44
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.57	16.36
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.57	16.29
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	44.3	16.05
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	44.3	16.05
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	44.3	16.05
GSMUA_Achr6P04030_001	Banana	cytosol	20.25	13.68
Solyc03g117020.2.1	Tomato	nucleus	50.63	10.84
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	22.78	9.47
HORVU7Hr1G079030.2	Barley	plastid	17.72	5.43

Protein Annotations

EnsemblPlants:GSMUA_Achr3P00940_001	EnsemblPlants:GSMUA_Achr3T00940_001	EnsemblPlantsGene:GSMUA_Achr3G00940_001	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020
InterPro:MIR_dom_sf	SUPFAM:SSF82109	UniParc:UPI00029550D4	UniProt:M0SAR2	MapMan:35.2	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G00940_001]

Coordinates

chr3:-:712349..715138

Molecular Weight (calculated)

9238.0 Da

IEP (calculated)

9.113

GRAVY (calculated)

-1.004

Length

79 amino acids

Sequence
(BLAST)

1: MSLNEKPMVS SFGGEGEFNT GDLWRLEIER SGKTCRLDQR VRLHHVDTGG YRHKHDEIYA KMDHTNLGFQ VSYLKKKKE

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.