Factsheet for GSMUA_Achr3P13410_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 6
plasma membrane 6
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	extracellular, nucleus, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P00940_001
GSMUA_Achr3P13410_001
GSMUA_Achr6P04010_001
GSMUA_Achr6P04030_001
GSMUA_Achr8P33890_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	GSMUA_Achr3P00940_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr3P13410_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04010_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr6P04030_001	AT2G25110.1	19763086
AT2G25110.1	GSMUA_Achr11P...	AT3G62600.1	19763086
AT2G25110.1	GSMUA_Achr8P33890_001	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	78.24	78.97
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	77.31	78.04
Os08t0278900-01	Rice	endoplasmic reticulum	77.31	76.96
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	76.85	76.5
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	75.46	75.12
PGSC0003DMT400036615	Potato	endoplasmic reticulum, extracellular, golgi	73.61	75.0
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	75.0	74.65
VIT_04s0008g05820.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	74.54	74.54
KRH61684	Soybean	endoplasmic reticulum	75.46	73.42
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	74.07	73.39
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	74.07	73.39
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	74.07	73.39
KRH52351	Soybean	endoplasmic reticulum	73.61	72.94
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	72.69	72.02
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	72.22	70.91
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	71.76	70.14
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	70.83	69.86
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	55.09	62.63
GSMUA_Achr6P04030_001	Banana	cytosol	28.7	52.99
GSMUA_Achr3P00940_001	Banana	cytosol	18.52	50.63
Solyc03g117020.2.1	Tomato	nucleus	73.61	43.09
HORVU7Hr1G079030.2	Barley	plastid	50.46	42.25

Protein Annotations

EnsemblPlants:GSMUA_Achr3P13410_001	EnsemblPlants:GSMUA_Achr3T13410_001	EnsemblPlantsGene:GSMUA_Achr3G13410_001	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0016020
InterPro:GlyclTrfase_39-like	InterPro:IPR016093	InterPro:MIR_dom_sf	InterPro:MIR_motif	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46
PFAM:PF02815	PFscan:PS50919	SignalP:SignalP-noTM	SMART:SM00472	SUPFAM:SSF82109	UniParc:UPI00029690BB
UniProt:M0SEA8	MapMan:19.1.1.2.1.3	:	:	:	:

Description

Stromal cell-derived factor 2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G13410_001]

Coordinates

chr3:-:9864619..9868785

Molecular Weight (calculated)

23920.1 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.486

Length

216 amino acids

Sequence
(BLAST)

001: MAFSFFAVAV LLYLGLEVPE GSPAPATAAQ EGVQITYGSV IKLMHDRTKF RLHSHDVPYG SGSGQQSVTG FPNVDDSNSY WVVKPPPDSS AKQGDVIPNG
101: TIIRLQHMRT RKWLHSHLHA SPITGNLEVS CYGGDMNSDT GDFWRLEIEG SGKTWKQDQR VRLRHVDTGG YLHSHDKKYS RIAGGQQEVC GVREKRPDNV
201: WLATEGVYLP INTSDV

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.