Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 6
- plasma membrane 5
- golgi 6
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G25110.1 | EES13770 | AT2G25110.1 | 19763086 |
AT2G25110.1 | EES15057 | AT2G25110.1 | 19763086 |
AT2G25110.1 | EES17752 | AT3G62600.1 | 19763086 |
AT2G25110.1 | KXG32445 | AT3G62600.1 | 19763086 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os08t0278900-01 | Rice | endoplasmic reticulum | 90.32 | 90.32 |
TraesCS7A01G330300.1 | Wheat | endoplasmic reticulum | 88.48 | 88.48 |
TraesCS7D01G327100.1 | Wheat | endoplasmic reticulum | 87.1 | 87.1 |
GSMUA_Achr3P13410_001 | Banana | endoplasmic reticulum, golgi, vacuole | 76.5 | 76.85 |
VIT_04s0008g05820.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 74.65 | 75.0 |
PGSC0003DMT400036615 | Potato | endoplasmic reticulum, extracellular, golgi | 73.27 | 75.0 |
VIT_09s0070g00030.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 73.73 | 74.77 |
KRH61684 | Soybean | endoplasmic reticulum | 75.58 | 73.87 |
KRH52351 | Soybean | endoplasmic reticulum | 74.19 | 73.85 |
TraesCS7B01G231000.1 | Wheat | endoplasmic reticulum | 64.06 | 73.16 |
CDY55710 | Canola | endoplasmic reticulum, extracellular, golgi | 70.05 | 69.72 |
CDY35374 | Canola | endoplasmic reticulum, extracellular, golgi | 70.05 | 69.72 |
Bra032038.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi | 70.05 | 69.72 |
AT2G25110.1 | Thale cress | endoplasmic reticulum, extracellular, golgi | 69.12 | 68.81 |
CDX76770 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.2 | 67.27 |
CDY56283 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.2 | 66.97 |
Bra007818.1-P | Field mustard | endoplasmic reticulum, plasma membrane | 67.28 | 66.67 |
EES15057 | Sorghum | endoplasmic reticulum | 66.36 | 66.67 |
GSMUA_Achr3P00940_001 | Banana | cytosol | 18.89 | 51.9 |
GSMUA_Achr6P04030_001 | Banana | cytosol | 27.65 | 51.28 |
HORVU7Hr1G079030.2 | Barley | plastid | 59.91 | 50.39 |
Solyc03g117020.2.1 | Tomato | nucleus | 72.81 | 42.82 |
Protein Annotations
MapMan:19.1.1.2.1.3 | Gene3D:2.80.10.50 | EntrezGene:8070012 | UniProt:C5YKL4 | EnsemblPlants:EES13770 | ProteinID:EES13770 |
ProteinID:EES13770.1 | GO:GO:0000030 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 |
GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 |
GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0042742 | GO:GO:0050832 |
GO:GO:0052033 | GO:GO:0097502 | InterPro:GlyclTrfase_39-like | InterPro:IPR016093 | InterPro:MIR_dom_sf | InterPro:MIR_motif |
PFscan:PS50919 | PANTHER:PTHR10050 | PANTHER:PTHR10050:SF46 | SMART:SM00472 | EnsemblPlantsGene:SORBI_3007G117500 | SUPFAM:SSF82109 |
unigene:Sbi.2226 | SignalP:SignalP-noTM | UniParc:UPI0001A87E9C | RefSeq:XP_002444275.1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr7:+:50981635..50984691
Molecular Weight (calculated)
24164.4 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.493
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASFALAL LLYLGLDLPE AAPAQSYAVD PGTVVEITYG SVIKLMHERT KFRLHSHDVP YGSGSGQQSV TSFPNVDDAN SYWIVRPQPE SSAKQGDPIT
101: QGTTIRLQHM RTRKWLHSHL HASPITGNLE VSCFGDENES DTGDYWRLEI EGSGKTWRQD QIIRLRHVDT GGYLHSHDRK YTRIAGGQQE VCGVGDKHPD
201: NLWLAAEGVY LPVIQRK
101: QGTTIRLQHM RTRKWLHSHL HASPITGNLE VSCFGDENES DTGDYWRLEI EGSGKTWRQD QIIRLRHVDT GGYLHSHDRK YTRIAGGQQE VCGVGDKHPD
201: NLWLAAEGVY LPVIQRK
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
Arabidopsis Description
SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.