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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 7
  • vacuole 6
  • plasma membrane 5
  • golgi 6
  • nucleus 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0278900-01 Rice endoplasmic reticulum 90.32 90.32
TraesCS7A01G330300.1 Wheat endoplasmic reticulum 88.48 88.48
TraesCS7D01G327100.1 Wheat endoplasmic reticulum 87.1 87.1
GSMUA_Achr3P13410_001 Banana endoplasmic reticulum, golgi, vacuole 76.5 76.85
VIT_04s0008g05820.t01 Wine grape endoplasmic reticulum, golgi, vacuole 74.65 75.0
PGSC0003DMT400036615 Potato endoplasmic reticulum, extracellular, golgi 73.27 75.0
VIT_09s0070g00030.t01 Wine grape endoplasmic reticulum, golgi, vacuole 73.73 74.77
KRH61684 Soybean endoplasmic reticulum 75.58 73.87
KRH52351 Soybean endoplasmic reticulum 74.19 73.85
TraesCS7B01G231000.1 Wheat endoplasmic reticulum 64.06 73.16
CDY55710 Canola endoplasmic reticulum, extracellular, golgi 70.05 69.72
CDY35374 Canola endoplasmic reticulum, extracellular, golgi 70.05 69.72
Bra032038.1-P Field mustard endoplasmic reticulum, extracellular, golgi 70.05 69.72
AT2G25110.1 Thale cress endoplasmic reticulum, extracellular, golgi 69.12 68.81
CDX76770 Canola endoplasmic reticulum, extracellular, plasma membrane 68.2 67.27
CDY56283 Canola endoplasmic reticulum, extracellular, plasma membrane 68.2 66.97
Bra007818.1-P Field mustard endoplasmic reticulum, plasma membrane 67.28 66.67
EES15057 Sorghum endoplasmic reticulum 66.36 66.67
GSMUA_Achr3P00940_001 Banana cytosol 18.89 51.9
GSMUA_Achr6P04030_001 Banana cytosol 27.65 51.28
HORVU7Hr1G079030.2 Barley plastid 59.91 50.39
Solyc03g117020.2.1 Tomato nucleus 72.81 42.82
Protein Annotations
MapMan:19.1.1.2.1.3Gene3D:2.80.10.50EntrezGene:8070012UniProt:C5YKL4EnsemblPlants:EES13770ProteinID:EES13770
ProteinID:EES13770.1GO:GO:0000030GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005975GO:GO:0006464GO:GO:0006486
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009605GO:GO:0009607
GO:GO:0009987GO:GO:0016020GO:GO:0016740GO:GO:0019538GO:GO:0042742GO:GO:0050832
GO:GO:0052033GO:GO:0097502InterPro:GlyclTrfase_39-likeInterPro:IPR016093InterPro:MIR_dom_sfInterPro:MIR_motif
PFscan:PS50919PANTHER:PTHR10050PANTHER:PTHR10050:SF46SMART:SM00472EnsemblPlantsGene:SORBI_3007G117500SUPFAM:SSF82109
unigene:Sbi.2226SignalP:SignalP-noTMUniParc:UPI0001A87E9CRefSeq:XP_002444275.1SEG:seg:
Description
hypothetical protein
Coordinates
chr7:+:50981635..50984691
Molecular Weight (calculated)
24164.4 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.493
Length
217 amino acids
Sequence
(BLAST)
001: MAAASFALAL LLYLGLDLPE AAPAQSYAVD PGTVVEITYG SVIKLMHERT KFRLHSHDVP YGSGSGQQSV TSFPNVDDAN SYWIVRPQPE SSAKQGDPIT
101: QGTTIRLQHM RTRKWLHSHL HASPITGNLE VSCFGDENES DTGDYWRLEI EGSGKTWRQD QIIRLRHVDT GGYLHSHDRK YTRIAGGQQE VCGVGDKHPD
201: NLWLAAEGVY LPVIQRK
Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)
001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK
Arabidopsis Description
SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.