Factsheet for PGSC0003DMT400036615

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, golgi
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023249
PGSC0003DMT400036615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25110.1	PGSC0003DMT400036615	AT2G25110.1	19763086
AT2G25110.1	PGSC0003DMT400023249	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52351	Soybean	endoplasmic reticulum	81.13	78.9
KRH61684	Soybean	endoplasmic reticulum	81.6	77.93
VIT_09s0070g00030.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	78.3	77.57
CDY55710	Canola	endoplasmic reticulum, extracellular, golgi	78.3	76.15
Bra032038.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi	77.83	75.69
CDY35374	Canola	endoplasmic reticulum, extracellular, golgi	77.83	75.69
CDX76770	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.36	74.55
AT2G25110.1	Thale cress	endoplasmic reticulum, extracellular, golgi	76.42	74.31
CDY56283	Canola	endoplasmic reticulum, extracellular, plasma membrane	77.36	74.21
Bra007818.1-P	Field mustard	endoplasmic reticulum, plasma membrane	76.42	73.97
GSMUA_Achr3P13410_001	Banana	endoplasmic reticulum, golgi, vacuole	75.0	73.61
EES13770	Sorghum	endoplasmic reticulum, golgi, vacuole	75.0	73.27
GSMUA_Achr6P04010_001	Banana	endoplasmic reticulum, golgi, plasma membrane	73.58	72.9
TraesCS7A01G330300.1	Wheat	endoplasmic reticulum	73.58	71.89
Os08t0278900-01	Rice	endoplasmic reticulum	73.11	71.43
TraesCS7D01G327100.1	Wheat	endoplasmic reticulum	73.11	71.43
Os08t0440500-01	Rice	endoplasmic reticulum, golgi, vacuole	70.75	69.12
EES15057	Sorghum	endoplasmic reticulum	68.4	67.13
Zm00001d032157_P001	Maize	endoplasmic reticulum, extracellular, golgi	67.92	66.67
TraesCS7D01G160300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.92	66.67
TraesCS7B01G063900.1	Wheat	golgi	67.45	66.2
Zm00001d050430_P003	Maize	extracellular	66.98	65.74
TraesCS7A01G159300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.92	65.16
TraesCS7B01G231000.1	Wheat	endoplasmic reticulum	50.47	56.32
Solyc03g117020.2.1	Tomato	nucleus	95.75	55.01
GSMUA_Achr6P04030_001	Banana	cytosol	29.72	53.85
GSMUA_Achr3P00940_001	Banana	cytosol	18.4	49.37
HORVU7Hr1G079030.2	Barley	plastid	45.28	37.21

Protein Annotations

EntrezGene:102598230	MapMan:19.1.1.2.1.3	Gene3D:2.80.10.50	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0016020	GO:GO:0042742	GO:GO:0050832	GO:GO:0052033	InterPro:GlyclTrfase_39-like	InterPro:IPR016093
UniProt:M1B3X3	InterPro:MIR_dom_sf	InterPro:MIR_motif	PFAM:PF02815	EnsemblPlantsGene:PGSC0003DMG400014120	PGSC:PGSC0003DMG400014120
EnsemblPlants:PGSC0003DMT400036615	PFscan:PS50919	PANTHER:PTHR10050	PANTHER:PTHR10050:SF46	SMART:SM00472	SUPFAM:SSF82109
SignalP:SignalP-noTM	UniParc:UPI0002960B3C	RefSeq:XP_006341358.1	SEG:seg	:	:

Description

Stromal cell-derived factor 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014120]

Coordinates

chr3:+:56820573..56825153

Molecular Weight (calculated)

23649.6 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.568

Length

212 amino acids

Sequence
(BLAST)

001: MAISFFGLAL FLFFTLDSDY TSTPVSAASE GVQITYGSAI KLMHEKTKFR LHSHDVPYGS GSGQQSVTGF PGVDDANSYW AVRSTDSSKQ GDPIKSGSII
101: RLQHMKTRKW LHSHLHASPI SGNMEVSCFG DDKESDTGDY WRLEIEGSGK TWRQDQRIRL QHIDTGGYLH SHDKKYTRIA GGQQEVCGVK EKRPDNVWLA
201: AEGVYFPVTE SK

Best Arabidopsis Sequence Match ( AT2G25110.1 )
(BLAST)

001: MALGFFCLAI FLYLSLDPDS GYTSASAAAS GKEGVEITYG SAIKLMHEKT KFRLHSHDVP YGSGSGQQSV TGFPGVVDSN SYWIVKPVPG TTEKQGDAVK
101: SGATIRLQHM KTRKWLHSHL HASPISGNLE VSCFGDDTNS DTGDHWKLII EGSGKTWKQD QRVRLQHIDT SGYLHSHDKK YQRIAGGQQE VCGIREKKAD
201: NIWLAAEGVY LPLNESSK

Arabidopsis Description

SDF2Stromal cell-derived factor 2-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE8]
SUBAcon: [endoplasmic reticulum,golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.