Factsheet for VIT_14s0060g02340.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 10
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09080.1	VIT_07s0005g01220.t01	AT3G62600.1	19763086

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22648	Canola	cytosol	75.96	81.49
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	80.89	78.71
Solyc01g099660.2.1	Tomato	extracellular	80.74	78.33
PGSC0003DMT400063543	Potato	endoplasmic reticulum	80.74	78.33
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	80.28	78.11
AT1G09080.1	Thale cress	endoplasmic reticulum	80.89	77.78
Bra031657.1-P	Field mustard	endoplasmic reticulum	80.59	77.71
CDY06347	Canola	endoplasmic reticulum	76.43	77.26
EER93587	Sorghum	endoplasmic reticulum	76.12	73.08
Os03t0710500-00	Rice	extracellular, plasma membrane	75.04	72.8
VIT_06s0004g04470.t01	Wine grape	cytosol	61.48	61.2
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	60.55	60.65
VIT_13s0019g01430.t01	Wine grape	cytosol	60.4	60.31
VIT_08s0007g00130.t01	Wine grape	cytosol	60.09	60.09
VIT_11s0037g00510.t01	Wine grape	cytosol	59.48	58.84
VIT_13s0019g00930.t01	Wine grape	cytosol	57.16	55.87
VIT_03s0097g00530.t01	Wine grape	mitochondrion	49.92	47.72
VIT_00s0415g00030.t01	Wine grape	mitochondrion	49.0	46.63
VIT_18s0041g01230.t01	Wine grape	plastid	46.69	43.91
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	47.0	43.14

Protein Annotations

Gene3D:1.20.1270.10	Gene3D:2.60.34.10	Gene3D:3.30.420.40	Gene3D:3.90.640.10	MapMan:35.1	ProteinID:AFJ20202
ProteinID:AFJ20202.1	ProteinID:CCB61852	ProteinID:CCB61852.1	ncoils:Coil	UniProt:F6I4L5	EMBL:FN596746
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0008150	GO:GO:0009653
GO:GO:0009856	GO:GO:0009860	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016592
GO:GO:0030154	GO:GO:0040007	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam
InterPro:IPR029047	InterPro:IPR029048	EMBL:JQ713556	PFAM:PF00012	PRINTS:PR00301	ScanProsite:PS00297
ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF215	SUPFAM:SSF100920	SUPFAM:SSF100934
SUPFAM:SSF53067	SignalP:SignalP-noTM	TIGR:TC68076	TMHMM:TMhelix	UniParc:UPI00021099A0	ArrayExpress:VIT_14s0060g02340
EnsemblPlantsGene:VIT_14s0060g02340	EnsemblPlants:VIT_14s0060g02340.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:+:1920620..1924241

Molecular Weight (calculated)

72366.7 Da

IEP (calculated)

5.094

GRAVY (calculated)

-0.377

Length

649 amino acids

Sequence
(BLAST)

001: MAVKNRAVMI LQLFVLEFLF GTALAAENSQ KLGTVIGIDL GTTYSCVGVY RNGHVEIIAN DQGNRITPSW VSFTNTERLI GEAAKNQAAL NPERTIFDVK
101: RLIGRKFDDP EVQRDIKFLP YKVVNKEGKP YIQVTIRDGE IKVFSPEEIS AMILGKMKET AEAYLGKKIK DAVVTVPAYF NDAQRQATKD AGIIAGLNVA
201: RIINEPTAAA IAYGLDKKAE KNILVYDLGG GTFDVSILAI DNGVFEVLAT SGDTHLGGED FDHRVMDYFI KLIKKKYDKD ISKDNKALGK LRRECERAKR
301: ALSSQHQVRV EIESLFDGID FSEPLTRARF EELNMDLFKK TMGPVKKALE DAGLKKTDIN EIVLVGGSTR IPKIQQMLKE MFDGKEPCKG VNPDEAVAYG
401: AAVQGGILSG EGGEETGGIL LLDVAPLSLG IETVGGVMTK LIPRNTVIPT KKSQIFTTYQ DQQPTVSIKV YEGERSLTKD CRELGRFELS GIPPAPRGVP
501: QIEVTFEVDA NGILHVRAED KAAKKSQSIT ITNDKGRLSQ EEIDRMVKEA EEFAEEDRQV KERIDARNKL ETYLYSMRAT INDRDKLADK IDSEDKEKIE
601: AALKEALDWL DDNQNADKDE YNEKLRGVEA VCNPVIKQVY EEWWGFFQF

Best Arabidopsis Sequence Match ( AT5G28540.1 )
(BLAST)

001: MARSFGANST VVLAIIFFGC LFALSSAIEE ATKLGSVIGI DLGTTYSCVG VYKNGHVEII ANDQGNRITP SWVGFTDSER LIGEAAKNQA AVNPERTVFD
101: VKRLIGRKFE DKEVQKDRKL VPYQIVNKDG KPYIQVKIKD GETKVFSPEE ISAMILTKMK ETAEAYLGKK IKDAVVTVPA YFNDAQRQAT KDAGVIAGLN
201: VARIINEPTA AAIAYGLDKK GGEKNILVFD LGGGTFDVSV LTIDNGVFEV LSTNGDTHLG GEDFDHRVME YFIKLIKKKH QKDISKDNKA LGKLRRECER
301: AKRALSSQHQ VRVEIESLFD GVDFSEPLTR ARFEELNNDL FRKTMGPVKK AMDDAGLQKS QIDEIVLVGG STRIPKVQQL LKDFFEGKEP NKGVNPDEAV
401: AYGAAVQGGI LSGEGGDETK DILLLDVAPL TLGIETVGGV MTKLIPRNTV IPTKKSQVFT TYQDQQTTVS IQVFEGERSL TKDCRLLGKF DLNGIPPAPR
501: GTPQIEVTFE VDANGILNVK AEDKASGKSE KITITNEKGR LSQEEIDRMV KEAEEFAEED KKVKEKIDAR NALETYVYNM KNQVNDKDKL ADKLEGDEKE
601: KIEAATKEAL EWLDENQNSE KEEYDEKLKE VEAVCNPIIT AVYQRSGGAP GGAGGESSTE EEDESHDEL

Arabidopsis Description

MED37AMediator of RNA polymerase II transcription subunit 37a [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.