Factsheet for VIT_18s0041g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0303000-01	Rice	plastid	58.7	88.24
CDY08914	Canola	cytosol	78.26	86.96
CDY34275	Canola	cytosol	78.26	86.4
CDY24832	Canola	cytosol	78.26	86.4
CDY11007	Canola	cytosol	77.68	86.17
GSMUA_Achr6P28370_001	Banana	plastid	79.28	85.2
Bra002461.1-P	Field mustard	cytosol	65.51	85.12
VIT_17s0000g03310.t01	Wine grape	extracellular, plastid	87.1	85.01
Zm00001d013507_P001	Maize	plastid	84.06	84.92
KXG37805	Sorghum	plastid	83.91	84.9
Zm00001d033591_P001	Maize	plastid	83.33	84.19
GSMUA_Achr9P07750_001	Banana	plastid	78.12	83.83
TraesCS1D01G131800.1	Wheat	plastid	82.17	83.14
TraesCS1A01G133100.2	Wheat	golgi	82.03	82.75
TraesCS1B01G151300.1	Wheat	plastid	82.17	82.65
Bra013786.1-P	Field mustard	plastid	83.91	81.43
CDY03462	Canola	plastid	83.91	81.32
AT4G24280.1	Thale cress	plastid	84.49	81.2
Bra010498.1-P	Field mustard	plastid	83.91	80.75
CDX92631	Canola	plastid	82.61	80.51
AT5G49910.1	Thale cress	plastid	83.77	80.5
Bra019231.1-P	Field mustard	plastid	82.75	80.42
CDY03461	Canola	plastid	76.81	74.54
HORVU1Hr1G030790.1	Barley	plastid	82.17	72.69
CDY03459	Canola	cytosol	64.78	67.52
VIT_03s0097g00530.t01	Wine grape	mitochondrion	51.16	51.99
VIT_00s0415g00030.t01	Wine grape	mitochondrion	50.58	51.17
VIT_08s0007g00130.t01	Wine grape	cytosol	45.07	47.92
VIT_13s0019g01430.t01	Wine grape	cytosol	44.78	47.54
VIT_06s0004g04510.t01	Wine grape	cytosol, extracellular	44.49	47.38
VIT_06s0004g04470.t01	Wine grape	cytosol	44.2	46.78
VIT_14s0060g02340.t01	Wine grape	endoplasmic reticulum	43.91	46.69
VIT_02s0025g02140.t01	Wine grape	endoplasmic reticulum	45.07	46.63
VIT_16s0098g01580.t01	Wine grape	endoplasmic reticulum	44.2	45.73
VIT_11s0037g00510.t01	Wine grape	cytosol	43.33	45.58
VIT_13s0019g00930.t01	Wine grape	cytosol	41.74	43.37
GSMUA_Achr6P12370_001	Banana	plastid	79.71	42.08

Protein Annotations

Gene3D:1.20.1270.10	EntrezGene:100248235	wikigene:100248235	MapMan:19.1.4.1	Gene3D:2.60.34.10	Gene3D:3.30.420.40
Gene3D:3.90.640.10	EMBL:AM434497	ProteinID:CAN78265	ProteinID:CAN78265.1	ProteinID:CCB61678	ProteinID:CCB61678.1
InterPro:Chaperone_DnaK	ncoils:Coil	UniProt:F6I3V5	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0051082	InterPro:HSP70_C_sf	InterPro:HSP70_peptide-bd_sf	InterPro:Heat_shock_70_CS	InterPro:Hsp_70_fam	InterPro:IPR029047
InterPro:IPR029048	EntrezGene:LOC100248235	wikigene:LOC100248235	HAMAP:MF_00332	PFAM:PF00012	PRINTS:PR00301
ScanProsite:PS00297	ScanProsite:PS00329	ScanProsite:PS01036	PANTHER:PTHR19375	PANTHER:PTHR19375:SF332	SUPFAM:SSF100920
SUPFAM:SSF100934	SUPFAM:SSF53067	TIGR:TC58947	TIGR:TC63631	TIGRFAMs:TIGR02350	UniParc:UPI0001985592
ArrayExpress:VIT_18s0041g01230	EnsemblPlantsGene:VIT_18s0041g01230	EnsemblPlants:VIT_18s0041g01230.t01	unigene:Vvi.10548	RefSeq:XP_002282802	RefSeq:XP_002282802.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:25847216..25853530

Molecular Weight (calculated)

74182.2 Da

IEP (calculated)

5.176

GRAVY (calculated)

-0.291

Length

690 amino acids

Sequence
(BLAST)

001: MASSAHVLGS FLTFSHEPNK PNARTWKPFL GQTLRLNSDS QRLCKQVRKK ASFHVVNEKV VGIDLGTTNS AVAAMEGGKP TIVTNAEGQR TTPSVVAYTK
101: NGDMLVGQIA KRQAVVNPEN TFFSVKRFIG RKMDEVGEEA KQVSYKVVRD ENGNVKLECP VLAKLFAAEE ISAQVLRKLA DDASKFLNDK VTKAVVTVPA
201: YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFEKK NNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG DDFDKRIVDW LAQNFKRDEG
301: IDLLKDKQAL QRLTETAEKA KIELSSLTQT NISLPFITAT SEGPKHIETT LTRAKFEELC SDLLDRLRTP VETALRDAKL SFKDLDEVIL VGGSTRIPAV
401: QDLVRKMTGK EPNVTVNPDE VVALGAAVQA GVLAGDVSNI VLLDVTPLSL GLETLGGVMT KIIPRNTTLP TSKSEVFSTA ADGQTSVEIN VLQGEREFVR
501: DNKSLGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVTAV DKGTGKKQDI TITGASTLPN DEVDRMVKEA EKFAKEDKEK RDAIDTKNQA DSVVYQTEKQ
601: LKELGDKVPA PVKGKVEAKL KELKDAISSG STTQTIKDAM AALNQEVMQI GQSLYSQAGA PGAGAGAGAA GSTDSKPDGD VIDADFTESK

Best Arabidopsis Sequence Match ( AT5G49910.1 )
(BLAST)

001: MASSAAQIHI LGGIGFPTSS SSSSTKNLDN KTNSIPRSVF FGNRTSPFTT PTSAFLRMGR RNNNASRYTV GPVRVVNEKV VGIDLGTTNS AVAAMEGGKP
101: TIVTNAEGQR TTPSVVAYTK SKDRLVGQIA KRQAVVNPEN TFFSVKRFIG RRMNEVAEES KQVSYRVIKD ENGNVKLDCP AIGKQFAAEE ISAQVLRKLV
201: DDASRFLNDK VTKAVITVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFERK SNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG
301: DDFDKRVVDW LASTFKKDEG IDLLKDKQAL QRLTEAAEKA KIELSSLTQT NMSLPFITAT ADGPKHIETT LTRGKFEELC SDLLDRVRTP VENSLRDAKL
401: SFKDIDEVIL VGGSTRIPAV QDLVRKLTGK EPNVSVNPDE VVALGAAVQA GVLSGDVSDI VLLDVTPLSL GLETLGGVMT KIIPRNTTLP TSKSEVFSTA
501: ADGQTSVEIN VLQGEREFVR DNKSIGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVSAS DKGTGKKQDI TITGASTLPK DEVDTMVQEA ERFAKEDKEK
601: RDAIDTKNQA DSVVYQTEKQ LKELGEKIPG PVKEKVEAKL QELKEKIASG STQEIKDTMA ALNQEVMQIG QSLYNQPQPG GADSPPGGEA SSSSDTSSSA
701: KGGDNGGDVI DADFTDSN

Arabidopsis Description

HSP70-7Heat shock 70 kDa protein 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LTX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.