Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016300.1-P | Field mustard | nucleus | 98.82 | 98.82 |
| CDY46427 | Canola | nucleus | 98.82 | 98.82 |
| AT1G26960.1 | Thale cress | nucleus | 85.43 | 85.1 |
| CDY44091 | Canola | nucleus | 67.72 | 64.66 |
| CDY38759 | Canola | nucleus | 71.65 | 64.08 |
| CDY11659 | Canola | nucleus | 71.65 | 63.19 |
| CDY70870 | Canola | nucleus | 72.83 | 61.46 |
| CDY23547 | Canola | nucleus | 66.93 | 60.71 |
| CDY48391 | Canola | nucleus | 56.69 | 57.14 |
| CDY69034 | Canola | nucleus | 44.88 | 42.54 |
| CDY69290 | Canola | nucleus | 41.73 | 42.4 |
| CDY48942 | Canola | nucleus | 26.38 | 41.36 |
| CDX78614 | Canola | nucleus | 46.06 | 38.87 |
| CDY28696 | Canola | nucleus | 40.16 | 38.64 |
| CDX70596 | Canola | nucleus | 45.28 | 37.83 |
| CDX69546 | Canola | nucleus | 45.28 | 37.22 |
| CDX85054 | Canola | nucleus | 44.88 | 37.13 |
| CDY70306 | Canola | nucleus | 41.34 | 35.96 |
| CDX67451 | Canola | nucleus | 23.62 | 33.71 |
| CDY11680 | Canola | nucleus | 23.62 | 33.71 |
| CDY69536 | Canola | nucleus | 20.47 | 33.33 |
| CDY28803 | Canola | nucleus | 18.9 | 30.77 |
| CDX99719 | Canola | nucleus | 22.44 | 29.23 |
| CDY33168 | Canola | nucleus | 21.26 | 28.57 |
| CDX75029 | Canola | nucleus | 20.47 | 27.81 |
| CDY25596 | Canola | nucleus | 27.95 | 26.69 |
| CDY37519 | Canola | nucleus | 26.38 | 25.77 |
| CDY49056 | Canola | nucleus | 25.98 | 25.1 |
| CDY28673 | Canola | nucleus | 26.77 | 25.0 |
| CDY39476 | Canola | nucleus | 27.56 | 24.82 |
| CDY11269 | Canola | nucleus | 21.26 | 24.77 |
| CDY25597 | Canola | nucleus | 29.13 | 24.75 |
| CDX69357 | Canola | nucleus | 28.74 | 24.75 |
| CDY33967 | Canola | nucleus | 29.92 | 24.52 |
| CDY37819 | Canola | nucleus | 29.92 | 24.52 |
| CDX76923 | Canola | nucleus | 29.92 | 24.52 |
| CDX75697 | Canola | nucleus | 28.35 | 24.41 |
| CDY10356 | Canola | nucleus | 22.05 | 24.35 |
| CDX70284 | Canola | nucleus | 22.05 | 24.35 |
| CDY71047 | Canola | nucleus | 22.05 | 24.35 |
| CDX89467 | Canola | nucleus | 28.74 | 24.33 |
| CDX80887 | Canola | nucleus | 20.87 | 24.31 |
| CDY69618 | Canola | nucleus | 29.13 | 24.26 |
| CDY67332 | Canola | nucleus | 29.13 | 24.26 |
| CDY04896 | Canola | nucleus | 21.65 | 24.23 |
| CDX90376 | Canola | nucleus | 26.77 | 23.86 |
| CDY13761 | Canola | nucleus | 29.13 | 23.79 |
| CDY42007 | Canola | nucleus | 20.47 | 23.74 |
| CDX70283 | Canola | nucleus | 20.47 | 23.74 |
| CDY71532 | Canola | nucleus | 20.47 | 22.81 |
| CDX76591 | Canola | nucleus | 20.47 | 22.71 |
| CDX89136 | Canola | nucleus | 20.08 | 22.27 |
| CDY57869 | Canola | nucleus | 19.29 | 21.3 |
| CDY27308 | Canola | nucleus | 18.9 | 20.96 |
| CDX80037 | Canola | nucleus | 19.68 | 19.68 |
| CDY41547 | Canola | nucleus | 19.29 | 19.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078IS08 | UniProt:A0A078IS08 | EnsemblPlants:CDY52767 | ProteinID:CDY52767 |
| ProteinID:CDY52767.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00007811001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EB38C8 | : |
Description
BnaC08g48560DBnaC08g48560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IS08]
Coordinates
chrLK033127:+:41088..42253
Molecular Weight (calculated)
29416.4 Da
IEP (calculated)
5.657
GRAVY (calculated)
-1.039
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNNGLAFF PANFSLQNHH QEEEDHPQYL LPSCTPPQDF HGFLGKRSPM QNVEGFCNLE MNGEEDFSDD GSKMGEKKRR LNMEQLKTLE KNFELGNKLD
101: SDRKLELARA LGLQPRQIAI WFQNRRARSK TKQLERDYDA LKRQFETLKD ENDLLQTQNQ KLQAQVIALK SKEPIESINL NKEEGSCSNR SENISGDIRP
201: GHPPPSPTAT TMQFFHNSSP EQRMVKEENS ISNMFCGMDD QTGFWPWFDQ QHYN
101: SDRKLELARA LGLQPRQIAI WFQNRRARSK TKQLERDYDA LKRQFETLKD ENDLLQTQNQ KLQAQVIALK SKEPIESINL NKEEGSCSNR SENISGDIRP
201: GHPPPSPTAT TMQFFHNSSP EQRMVKEENS ISNMFCGMDD QTGFWPWFDQ QHYN
001: MSCNNNGLAF FPENFSLQNH HQEEEDHPQL LQDFHGFLGK RSPMNNVQGF CNLDMNGDEE YSDDGSKMGE KKRRLNMEQL KALEKDFELG NKLESDRKLE
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN
101: LARALGLQPR QIAIWFQNRR ARSKTKQLEK DYDMLKRQFE SLRDENEVLQ TQNQKLQAQV MALKSREPIE SINLNKETEG SCSDRSENIS GDIRPPEIDS
201: QFALGHPPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID DQSGFWPWLD QQQYN
Arabidopsis Description
ATHB-23Homeobox-leucine zipper protein ATHB-23 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.