Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69034 | Canola | nucleus | 96.0 | 89.55 |
| Bra039135.1-P | Field mustard | nucleus | 97.2 | 89.34 |
| CDY28696 | Canola | nucleus | 77.6 | 73.48 |
| AT3G01220.1 | Thale cress | nucleus | 83.2 | 72.73 |
| CDY70306 | Canola | nucleus | 68.0 | 58.22 |
| CDX78614 | Canola | nucleus | 68.4 | 56.81 |
| CDX85054 | Canola | nucleus | 68.8 | 56.03 |
| CDX69546 | Canola | nucleus | 68.4 | 55.34 |
| CDX70596 | Canola | nucleus | 67.2 | 55.26 |
| PGSC0003DMT400017751 | Potato | nucleus | 42.4 | 47.11 |
| PGSC0003DMT400003586 | Potato | nucleus | 43.6 | 45.61 |
| KRG93515 | Soybean | nucleus | 52.0 | 44.52 |
| KRH18490 | Soybean | nucleus | 51.2 | 43.99 |
| KRH40114 | Soybean | nucleus | 46.8 | 43.33 |
| KRH01157 | Soybean | nucleus | 46.0 | 42.91 |
| CDY46427 | Canola | nucleus | 42.8 | 42.13 |
| CDY52767 | Canola | nucleus | 42.4 | 41.73 |
| Solyc02g067410.1.1 | Tomato | nucleus | 43.2 | 41.06 |
| CDY44091 | Canola | nucleus | 43.6 | 40.98 |
| CDY48942 | Canola | nucleus | 25.6 | 39.51 |
| CDY38759 | Canola | nucleus | 44.8 | 39.44 |
| CDY23547 | Canola | nucleus | 43.2 | 38.57 |
| CDY11659 | Canola | nucleus | 44.4 | 38.54 |
| CDY70870 | Canola | nucleus | 46.4 | 38.54 |
| CDX67451 | Canola | nucleus | 27.2 | 38.2 |
| CDY11680 | Canola | nucleus | 27.2 | 38.2 |
| CDY48391 | Canola | nucleus | 38.0 | 37.7 |
| Solyc02g087840.2.1 | Tomato | nucleus | 45.2 | 36.57 |
| CDY69536 | Canola | nucleus | 19.6 | 31.41 |
| CDX99719 | Canola | nucleus | 23.6 | 30.26 |
| CDY28803 | Canola | nucleus | 18.8 | 30.13 |
| CDX75029 | Canola | nucleus | 22.4 | 29.95 |
| CDY33168 | Canola | nucleus | 22.4 | 29.63 |
| CDY25596 | Canola | nucleus | 31.2 | 29.32 |
| CDY49056 | Canola | nucleus | 30.0 | 28.52 |
| CDY37519 | Canola | nucleus | 29.6 | 28.46 |
| CDY28673 | Canola | nucleus | 30.8 | 28.31 |
| CDX69357 | Canola | nucleus | 32.8 | 27.8 |
| CDX75697 | Canola | nucleus | 32.0 | 27.12 |
| CDY39476 | Canola | nucleus | 30.4 | 26.95 |
| CDX90376 | Canola | nucleus | 30.4 | 26.67 |
| CDX80887 | Canola | nucleus | 23.2 | 26.61 |
| CDY25597 | Canola | nucleus | 31.6 | 26.42 |
| CDY11269 | Canola | nucleus | 22.8 | 26.15 |
| CDX89467 | Canola | nucleus | 31.2 | 26.0 |
| CDX76923 | Canola | nucleus | 31.6 | 25.48 |
| CDY33967 | Canola | nucleus | 31.2 | 25.16 |
| CDY37819 | Canola | nucleus | 31.2 | 25.16 |
| CDY04896 | Canola | nucleus | 22.8 | 25.11 |
| CDY69618 | Canola | nucleus | 30.4 | 24.92 |
| CDY71047 | Canola | nucleus | 22.8 | 24.78 |
| CDY13761 | Canola | nucleus | 30.8 | 24.76 |
| CDY67332 | Canola | nucleus | 30.0 | 24.59 |
| CDY10356 | Canola | nucleus | 22.4 | 24.35 |
| CDX70284 | Canola | nucleus | 22.4 | 24.35 |
| CDY71532 | Canola | nucleus | 22.0 | 24.12 |
| CDX89136 | Canola | nucleus | 22.0 | 24.02 |
| CDY57869 | Canola | nucleus | 21.6 | 23.48 |
| CDX76591 | Canola | nucleus | 21.2 | 23.14 |
| CDX70283 | Canola | nucleus | 20.0 | 22.83 |
| CDY42007 | Canola | nucleus | 19.6 | 22.37 |
| CDY27308 | Canola | nucleus | 20.4 | 22.27 |
| CDX80037 | Canola | nucleus | 21.6 | 21.26 |
| CDY41547 | Canola | nucleus | 21.2 | 20.87 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078JSB8 | UniProt:A0A078JSB8 | EnsemblPlants:CDY69290 | ProteinID:CDY69290 |
| ProteinID:CDY69290.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00086174001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF264 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE39E4 | : |
Description
BnaAnng29920DBnaAnng29920D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JSB8]
Coordinates
chrLK039056:+:134..1707
Molecular Weight (calculated)
28991.9 Da
IEP (calculated)
6.710
GRAVY (calculated)
-0.931
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: NLYIVLLVFI GGGNYMMNRS MSLTNVRDDP HQSVDEENLS DDGSHMMLGE KKKRLQLEQV KVLEKSFELG NKLDPERKIQ LAKALGMQPR QIAIWFQNRR
101: ARWKTRQLER DYDSLKKQFD SLKSDNDSLL AHNKKLLAEV MSLRNKDYNE ASIIKREAEA SWSNNGSTEN SSDINLEIPR ETTTTHVNTI KNLFPSSIPS
201: STHHQDHHHQ NNEMVQEESF CNMFNGIDET TSAGYWGWSD PNHNHHHQFN
101: ARWKTRQLER DYDSLKKQFD SLKSDNDSLL AHNKKLLAEV MSLRNKDYNE ASIIKREAEA SWSNNGSTEN SSDINLEIPR ETTTTHVNTI KNLFPSSIPS
201: STHHQDHHHQ NNEMVQEESF CNMFNGIDET TSAGYWGWSD PNHNHHHQFN
001: MYVFDPTTEA GLRLEMAFPQ HGFMFQQLHE DNSQDQLPSC PPHLFNGGGN YMMNRSMSLM NVQEDHNQTL DEENLSDDGA HTMLGEKKKR LQLEQVKALE
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
101: KSFELGNKLE PERKIQLAKA LGMQPRQIAI WFQNRRARWK TRQLERDYDS LKKQFESLKS DNASLLAYNK KLLAEVMALK NKECNEGNIV KREAEASWSN
201: NGSTENSSDI NLEMPRETIT THVNTIKDLF PSSIRSSAHD DDHHQNHEIV QEESLCNMFN GIDETTPAGY WAWSDPNHNH HHHQFN
Arabidopsis Description
ATHB-20Homeobox-leucine zipper protein ATHB-20 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAT0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.