Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008717.1-P | Field mustard | nucleus | 93.2 | 100.0 |
| CDX85054 | Canola | nucleus | 99.03 | 99.67 |
| AT5G15150.1 | Thale cress | nucleus | 91.91 | 90.45 |
| CDX78614 | Canola | nucleus | 86.41 | 88.7 |
| CDX70596 | Canola | nucleus | 86.41 | 87.83 |
| CDY70306 | Canola | nucleus | 74.43 | 78.77 |
| CDY69034 | Canola | nucleus | 60.19 | 69.4 |
| CDY69290 | Canola | nucleus | 55.34 | 68.4 |
| CDY28696 | Canola | nucleus | 54.69 | 64.02 |
| KRG93515 | Soybean | nucleus | 50.49 | 53.42 |
| KRH40114 | Soybean | nucleus | 46.6 | 53.33 |
| KRH18490 | Soybean | nucleus | 49.51 | 52.58 |
| KRH01157 | Soybean | nucleus | 44.98 | 51.87 |
| PGSC0003DMT400003586 | Potato | nucleus | 37.22 | 48.12 |
| PGSC0003DMT400017751 | Potato | nucleus | 34.3 | 47.11 |
| Solyc02g067410.1.1 | Tomato | nucleus | 39.48 | 46.39 |
| CDY52767 | Canola | nucleus | 37.22 | 45.28 |
| CDY46427 | Canola | nucleus | 36.89 | 44.88 |
| CDY38759 | Canola | nucleus | 40.13 | 43.66 |
| CDY44091 | Canola | nucleus | 37.54 | 43.61 |
| Solyc02g087840.2.1 | Tomato | nucleus | 43.04 | 43.04 |
| CDY23547 | Canola | nucleus | 38.84 | 42.86 |
| CDY11659 | Canola | nucleus | 39.81 | 42.71 |
| CDY48942 | Canola | nucleus | 22.33 | 42.59 |
| CDY48391 | Canola | nucleus | 34.63 | 42.46 |
| CDX67451 | Canola | nucleus | 23.62 | 41.01 |
| CDY11680 | Canola | nucleus | 23.62 | 41.01 |
| CDY70870 | Canola | nucleus | 39.81 | 40.86 |
| CDX75029 | Canola | nucleus | 20.39 | 33.69 |
| CDY33168 | Canola | nucleus | 20.39 | 33.33 |
| CDX99719 | Canola | nucleus | 20.06 | 31.79 |
| CDY69536 | Canola | nucleus | 15.86 | 31.41 |
| CDY28803 | Canola | nucleus | 15.86 | 31.41 |
| CDY37519 | Canola | nucleus | 25.57 | 30.38 |
| CDY25596 | Canola | nucleus | 25.89 | 30.08 |
| CDY49056 | Canola | nucleus | 25.24 | 29.66 |
| CDY28673 | Canola | nucleus | 25.89 | 29.41 |
| CDX69357 | Canola | nucleus | 26.86 | 28.14 |
| CDY25597 | Canola | nucleus | 27.18 | 28.09 |
| CDY39476 | Canola | nucleus | 25.57 | 28.01 |
| CDY11269 | Canola | nucleus | 19.74 | 27.98 |
| CDX75697 | Canola | nucleus | 26.54 | 27.8 |
| CDX89467 | Canola | nucleus | 26.86 | 27.67 |
| CDX80887 | Canola | nucleus | 19.42 | 27.52 |
| CDX90376 | Canola | nucleus | 25.24 | 27.37 |
| CDX76923 | Canola | nucleus | 27.18 | 27.1 |
| CDY13761 | Canola | nucleus | 27.18 | 27.01 |
| CDY71047 | Canola | nucleus | 20.06 | 26.96 |
| CDX70284 | Canola | nucleus | 19.74 | 26.52 |
| CDY10356 | Canola | nucleus | 19.74 | 26.52 |
| CDY71532 | Canola | nucleus | 19.42 | 26.32 |
| CDX89136 | Canola | nucleus | 19.42 | 26.2 |
| CDX70283 | Canola | nucleus | 18.45 | 26.03 |
| CDY57869 | Canola | nucleus | 19.09 | 25.65 |
| CDY42007 | Canola | nucleus | 18.12 | 25.57 |
| CDY33967 | Canola | nucleus | 25.57 | 25.48 |
| CDY37819 | Canola | nucleus | 25.57 | 25.48 |
| CDX76591 | Canola | nucleus | 18.77 | 25.33 |
| CDY69618 | Canola | nucleus | 24.92 | 25.25 |
| CDY04896 | Canola | nucleus | 18.45 | 25.11 |
| CDY67332 | Canola | nucleus | 24.6 | 24.92 |
| CDY27308 | Canola | nucleus | 17.8 | 24.02 |
| CDX80037 | Canola | nucleus | 19.42 | 23.62 |
| CDY41547 | Canola | nucleus | 19.09 | 23.23 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078BXS4 | EnsemblPlants:CDX69546 | ProteinID:CDX69546 | ProteinID:CDX69546.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | EnsemblPlantsGene:GSBRNA2T00135548001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 |
| PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF264 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EEE00A |
| SEG:seg | : | : | : | : | : |
Description
BnaA10g18950D
Coordinates
chrLK031790:+:731465..733311
Molecular Weight (calculated)
35943.9 Da
IEP (calculated)
6.680
GRAVY (calculated)
-1.030
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MYMYEEERNN IANNQERLRL EMAFPQHGFM FQQLHEDNTH HLPSPTSLPS CPPHLFYGGG NYMMNRSMSF TGVSDHHHLT QKSPTTTNMH DQDQVGEEDN
101: LSDDGSHMIL GEKKKRLSLE QVMALEKSFE LGNKLEPERK MQLAKALGLQ PRQIAIWFQN RRARWKTKQL ERDYDSLKKQ FDVLKSDNDS LLANNKKLHA
201: ELVALKKQDR QESAKIKREI AEASWSNNES TENDNNNSDI NHVNMIKDLF PSSIRSATTT TTSAHIDHQM VQDQGFCNMF SSIDETTSGS YWTWPDQQQQ
301: HHNHHHHFN
101: LSDDGSHMIL GEKKKRLSLE QVMALEKSFE LGNKLEPERK MQLAKALGLQ PRQIAIWFQN RRARWKTKQL ERDYDSLKKQ FDVLKSDNDS LLANNKKLHA
201: ELVALKKQDR QESAKIKREI AEASWSNNES TENDNNNSDI NHVNMIKDLF PSSIRSATTT TTSAHIDHQM VQDQGFCNMF SSIDETTSGS YWTWPDQQQQ
301: HHNHHHHFN
001: MYMYEEERNN INNNQEGLRL EMAFPQHGFM FQQLHEDNAH HLPSPTSLPS CPPHLFYGGG GNYMMNRSMS FTGVSDHHHL TQKSPTTTNN MNDQDQVGEE
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN
101: DNLSDDGSHM MLGEKKKRLN LEQVRALEKS FELGNKLEPE RKMQLAKALG LQPRQIAIWF QNRRARWKTK QLERDYDSLK KQFDVLKSDN DSLLAHNKKL
201: HAELVALKKH DRKESAKIKR EFAEASWSNN GSTENNHNNN SSDANHVSMI KDLFPSSIRS ATATTTSTHI DHQIVQDQDQ GFCNMFNGID ETTSASYWAW
301: PDQQQQHHNH HQFN
Arabidopsis Description
HAT7Homeobox-leucine zipper protein HAT7 [Source:UniProtKB/Swiss-Prot;Acc:Q00466]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.