Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48391 | Canola | nucleus | 85.0 | 94.44 |
| CDY11659 | Canola | nucleus | 86.79 | 84.38 |
| AT1G69780.1 | Thale cress | nucleus | 88.57 | 84.35 |
| CDY38759 | Canola | nucleus | 85.0 | 83.8 |
| CDY44091 | Canola | nucleus | 77.5 | 81.58 |
| CDY70870 | Canola | nucleus | 83.57 | 77.74 |
| CDY52767 | Canola | nucleus | 60.71 | 66.93 |
| CDY46427 | Canola | nucleus | 60.71 | 66.93 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 63.57 | 62.46 |
| KRG99129 | Soybean | nucleus | 59.29 | 59.5 |
| KRH45876 | Soybean | nucleus | 58.93 | 58.93 |
| KRH74821 | Soybean | nucleus | 60.71 | 58.42 |
| KRH69308 | Soybean | nucleus | 60.71 | 57.63 |
| Solyc05g007180.2.1 | Tomato | nucleus | 61.07 | 56.07 |
| PGSC0003DMT400065805 | Potato | nucleus | 61.07 | 55.88 |
| KRG99070 | Soybean | nucleus | 31.79 | 51.74 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 42.86 | 51.72 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 49.29 | 50.0 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 49.64 | 49.12 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 48.93 | 48.93 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 40.71 | 48.31 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 50.36 | 48.29 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 47.86 | 47.69 |
| GSMUA_Achr10P... | Banana | nucleus | 48.57 | 47.55 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 44.64 | 46.99 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 48.57 | 46.42 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 46.79 | 46.29 |
| CDY69034 | Canola | nucleus | 42.14 | 44.03 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 51.43 | 43.5 |
| CDY69290 | Canola | nucleus | 38.57 | 43.2 |
| CDY48942 | Canola | nucleus | 24.64 | 42.59 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 51.43 | 42.48 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 50.71 | 42.01 |
| Zm00001d027852_P001 | Maize | nucleus | 51.43 | 41.86 |
| EER92780 | Sorghum | nucleus | 52.5 | 41.41 |
| CDX78614 | Canola | nucleus | 43.21 | 40.2 |
| Zm00001d048312_P001 | Maize | nucleus | 49.29 | 40.12 |
| CDX70596 | Canola | nucleus | 42.5 | 39.14 |
| CDY28696 | Canola | nucleus | 36.79 | 39.02 |
| CDX69546 | Canola | nucleus | 42.86 | 38.84 |
| CDX85054 | Canola | nucleus | 42.5 | 38.76 |
| CDY70306 | Canola | nucleus | 39.29 | 37.67 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 51.43 | 36.55 |
| CDX67451 | Canola | nucleus | 22.86 | 35.96 |
| CDY11680 | Canola | nucleus | 22.86 | 35.96 |
| Os10t0404900-01 | Rice | nucleus | 43.21 | 34.08 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 31.07 | 33.98 |
| EER94272 | Sorghum | nucleus | 43.57 | 33.7 |
| Zm00001d014201_P001 | Maize | nucleus | 41.79 | 33.62 |
| Zm00001d033005_P001 | Maize | nucleus | 41.43 | 31.96 |
| CDX99719 | Canola | nucleus | 21.79 | 31.28 |
| CDY37519 | Canola | nucleus | 27.86 | 30.0 |
| CDY28673 | Canola | nucleus | 28.57 | 29.41 |
| CDY33168 | Canola | nucleus | 19.64 | 29.1 |
| CDY25596 | Canola | nucleus | 27.5 | 28.95 |
| CDY49056 | Canola | nucleus | 27.14 | 28.9 |
| CDX75029 | Canola | nucleus | 19.29 | 28.88 |
| CDY69536 | Canola | nucleus | 16.07 | 28.85 |
| CDY28803 | Canola | nucleus | 16.07 | 28.85 |
| CDX69357 | Canola | nucleus | 29.29 | 27.8 |
| CDY25597 | Canola | nucleus | 29.64 | 27.76 |
| CDX89467 | Canola | nucleus | 29.29 | 27.33 |
| CDY39476 | Canola | nucleus | 27.5 | 27.3 |
| CDY67332 | Canola | nucleus | 29.64 | 27.21 |
| CDY69618 | Canola | nucleus | 29.64 | 27.21 |
| CDX75697 | Canola | nucleus | 28.57 | 27.12 |
| CDY33967 | Canola | nucleus | 30.0 | 27.1 |
| CDY37819 | Canola | nucleus | 30.0 | 27.1 |
| CDX76923 | Canola | nucleus | 30.0 | 27.1 |
| CDY71532 | Canola | nucleus | 21.79 | 26.75 |
| CDY13761 | Canola | nucleus | 29.64 | 26.69 |
| CDX90376 | Canola | nucleus | 27.14 | 26.67 |
| CDX89136 | Canola | nucleus | 21.07 | 25.76 |
| CDY11269 | Canola | nucleus | 19.64 | 25.23 |
| CDX76591 | Canola | nucleus | 20.36 | 24.89 |
| CDY57869 | Canola | nucleus | 20.36 | 24.78 |
| CDX80887 | Canola | nucleus | 19.29 | 24.77 |
| CDY04896 | Canola | nucleus | 19.29 | 23.79 |
| CDY42007 | Canola | nucleus | 18.57 | 23.74 |
| CDX70283 | Canola | nucleus | 18.57 | 23.74 |
| CDY10356 | Canola | nucleus | 18.93 | 23.04 |
| CDX70284 | Canola | nucleus | 18.93 | 23.04 |
| CDY71047 | Canola | nucleus | 18.93 | 23.04 |
| CDY27308 | Canola | nucleus | 18.57 | 22.71 |
| CDX80037 | Canola | nucleus | 20.36 | 22.44 |
| CDY41547 | Canola | nucleus | 20.0 | 22.05 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.1 | GO:A0A078GEN3 | UniProt:A0A078GEN3 | EnsemblPlants:CDY23547 | ProteinID:CDY23547 |
| ProteinID:CDY23547.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSBRNA2T00022200001 | InterPro:HTH_motif | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 |
| InterPro:Leu_zip_homeo | PFAM:PF00046 | PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 | SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE7942 | SEG:seg |
Description
BnaC06g25160DBnaC06g25160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEN3]
Coordinates
chrLK032144:-:551112..552679
Molecular Weight (calculated)
31925.5 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.862
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCNNGMSFF PSSFIIQNSY EDDHPHQTPS LAPLLPSCSM PQDLNGFASF IGKQILEEDY SDDGSQMGEK KRRLNMEQVK TLEKTFELGN KLELERKMQL
101: ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDTLKLKFDA LKAENDRLQT HNEKLQAEIM GLKNKEQTKS INLNKETEGS CSNKSDNISD NLRLDISTPP
201: PPSIESTITA GHPPPPQTVG RHFFPPSPAT ARTTTTTLKF FQNSSSGQSM VKEENSISNM FYATDDHSGF WPWLDQQQYN
101: ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDTLKLKFDA LKAENDRLQT HNEKLQAEIM GLKNKEQTKS INLNKETEGS CSNKSDNISD NLRLDISTPP
201: PPSIESTITA GHPPPPQTVG RHFFPPSPAT ARTTTTTLKF FQNSSSGQSM VKEENSISNM FYATDDHSGF WPWLDQQQYN
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.