Factsheet for VIT_01s0026g01950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74821	Soybean	nucleus	84.91	83.16
KRG99129	Soybean	nucleus	81.05	82.8
KRH45876	Soybean	nucleus	80.35	81.79
KRH69308	Soybean	nucleus	84.21	81.36
Solyc05g007180.2.1	Tomato	nucleus	82.11	76.72
PGSC0003DMT400065805	Potato	nucleus	81.75	76.14
KRG99070	Soybean	nucleus	44.91	74.42
VIT_14s0108g00390.t01	Wine grape	nucleus	69.82	70.32
AT1G69780.1	Thale cress	nucleus	70.53	68.37
PGSC0003DMT400002259	Potato	nucleus	56.14	68.09
Bra007881.1-P	Field mustard	nucleus	67.37	67.37
CDY44091	Canola	nucleus	62.81	67.29
CDY38759	Canola	nucleus	65.96	66.2
Bra016266.1-P	Field mustard	nucleus	66.32	65.62
CDY11659	Canola	nucleus	65.96	65.28
Solyc01g010600.2.1	Tomato	nucleus	55.09	64.61
CDY70870	Canola	nucleus	67.72	64.12
CDY23547	Canola	nucleus	62.46	63.57
Bra003980.1-P	Field mustard	nucleus	54.74	61.9
CDY48391	Canola	nucleus	54.74	61.9
GSMUA_Achr1P21620_001	Banana	nucleus	60.7	61.57
GSMUA_Achr6P36450_001	Banana	nucleus	49.82	61.21
GSMUA_Achr4P00550_001	Banana	nucleus	60.0	61.07
GSMUA_Achr7P20950_001	Banana	nucleus	50.18	60.59
GSMUA_Achr2P07420_001	Banana	nucleus	61.75	60.27
GSMUA_Achr10P...	Banana	nucleus	60.0	59.79
GSMUA_Achr1P12270_001	Banana	nucleus	61.05	59.39
GSMUA_Achr7P11600_001	Banana	nucleus	57.19	59.06
GSMUA_Achr3P21430_001	Banana	nucleus	55.09	59.02
GSMUA_Achr6P10660_001	Banana	nucleus	57.89	58.3
TraesCS4B01G287600.1	Wheat	nucleus	60.0	51.66
Zm00001d027852_P001	Maize	nucleus	61.4	50.87
TraesCS4D01G286400.2	Wheat	nucleus	60.0	50.44
EER92780	Sorghum	nucleus	62.81	50.42
TraesCS4A01G016600.1	Wheat	nucleus, plastid	59.3	50.0
Zm00001d048312_P001	Maize	nucleus	59.65	49.42
HORVU4Hr1G075180.3	Barley	nucleus, plastid	60.0	43.4
Os10t0404900-01	Rice	nucleus	51.23	41.13
Zm00001d014201_P001	Maize	nucleus	48.77	39.94
EER94272	Sorghum	nucleus	50.53	39.78
HORVU4Hr1G075170.1	Barley	nucleus	35.44	39.45
Zm00001d033005_P001	Maize	nucleus	46.67	36.64
VIT_10s0003g00380.t01	Wine grape	nucleus	20.0	33.33
VIT_14s0066g01440.t01	Wine grape	nucleus	30.18	31.5
VIT_17s0000g05630.t01	Wine grape	nucleus	34.04	30.6
VIT_19s0014g02110.t01	Wine grape	nucleus	17.19	30.43
VIT_01s0026g01550.t01	Wine grape	nucleus	34.04	30.22
VIT_07s0191g00180.t01	Wine grape	nucleus	33.68	28.66
VIT_08s0007g04200.t01	Wine grape	nucleus	22.11	28.64
VIT_18s0001g06430.t01	Wine grape	nucleus	27.72	27.53
VIT_02s0025g02590.t01	Wine grape	nucleus	17.54	26.04
VIT_16s0098g01170.t01	Wine grape	nucleus	20.0	25.33
VIT_15s0048g02870.t01	Wine grape	nucleus	21.05	24.69

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100241332	wikigene:100241332	MapMan:15.5.3.1	EMBL:AM424761	ProteinID:CAN62385
ProteinID:CAN62385.1	ProteinID:CCB56570	ProteinID:CCB56570.1	ncoils:Coil	UniProt:F6HPE2	EMBL:FN596002
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf
InterPro:Homeobox_CS	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100241332	wikigene:LOC100241332	InterPro:Leu_zip_homeo
PFAM:PF00046	PFAM:PF02183	PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF176	SMART:SM00389	SUPFAM:SSF46689	TIGR:TC52571	UniParc:UPI0001982AD9	ArrayExpress:VIT_01s0026g01950
EnsemblPlantsGene:VIT_01s0026g01950	EnsemblPlants:VIT_01s0026g01950.t01	unigene:Vvi.199	RefSeq:XP_002276889	RefSeq:XP_002276889.1	:

Description

No Description!

Coordinates

chr1:-:11305006..11306844

Molecular Weight (calculated)

32406.2 Da

IEP (calculated)

5.741

GRAVY (calculated)

-0.799

Length

285 amino acids

Sequence
(BLAST)

001: MTCNGMAFFP ANFMLQTPRE DDHQPPNSLN PILPSCAPQD FHGVASLLGK RSMSFSGIDV CEETNGEDDL SDDGSQAGEK KRRLNMEQVK TLEKNFELGN
101: KLEPERKMQL ARALGLQPRQ IAIWFQNRRA RWKTKQLEKD YDLLKRQFEA VKAENDALQA QNQKLHAEML ALKSREPTES INLNIKETEG SCSNRSENSS
201: DIKLDISRTP AIDSPLSTHP TSRPLFPSSI RPAGVVQLFQ NSSSRPDLQC QKMDQPVKEE SFCNMFCGMD DQSGFWPWLE QQHFN

Best Arabidopsis Sequence Match ( AT1G69780.1 )
(BLAST)

001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN

Arabidopsis Description

ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.