Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027852_P001 | Maize | nucleus | 82.85 | 82.85 |
| EER92780 | Sorghum | nucleus | 85.17 | 82.54 |
| TraesCS4B01G287600.1 | Wheat | nucleus | 70.93 | 73.72 |
| TraesCS4D01G286400.2 | Wheat | nucleus | 71.22 | 72.27 |
| TraesCS4A01G016600.1 | Wheat | nucleus, plastid | 70.06 | 71.3 |
| HORVU4Hr1G075180.3 | Barley | nucleus, plastid | 71.8 | 62.69 |
| GSMUA_Achr2P07420_001 | Banana | nucleus | 52.91 | 62.33 |
| GSMUA_Achr1P21620_001 | Banana | nucleus | 50.87 | 62.28 |
| GSMUA_Achr7P11600_001 | Banana | nucleus | 48.55 | 60.51 |
| GSMUA_Achr6P10660_001 | Banana | nucleus | 49.71 | 60.42 |
| VIT_01s0026g01950.t01 | Wine grape | nucleus | 49.42 | 59.65 |
| GSMUA_Achr1P12270_001 | Banana | nucleus | 50.0 | 58.7 |
| GSMUA_Achr10P... | Banana | nucleus | 48.55 | 58.39 |
| GSMUA_Achr3P21430_001 | Banana | nucleus | 44.77 | 57.89 |
| KRG99129 | Soybean | nucleus | 45.35 | 55.91 |
| KRH74821 | Soybean | nucleus | 46.8 | 55.33 |
| KRH69308 | Soybean | nucleus | 47.38 | 55.25 |
| KRH45876 | Soybean | nucleus | 44.77 | 55.0 |
| VIT_14s0108g00390.t01 | Wine grape | nucleus | 45.06 | 54.77 |
| Solyc05g007180.2.1 | Tomato | nucleus | 48.26 | 54.43 |
| Zm00001d014201_P001 | Maize | nucleus | 54.94 | 54.31 |
| PGSC0003DMT400065805 | Potato | nucleus | 48.26 | 54.25 |
| CDY44091 | Canola | nucleus | 41.57 | 53.76 |
| PGSC0003DMT400002259 | Potato | nucleus | 36.63 | 53.62 |
| Zm00001d033005_P001 | Maize | nucleus | 55.52 | 52.62 |
| Bra007881.1-P | Field mustard | nucleus | 43.31 | 52.28 |
| CDY38759 | Canola | nucleus | 43.02 | 52.11 |
| AT1G69780.1 | Thale cress | nucleus | 44.48 | 52.04 |
| Bra016266.1-P | Field mustard | nucleus | 43.31 | 51.74 |
| CDY11659 | Canola | nucleus | 43.02 | 51.39 |
| GSMUA_Achr6P36450_001 | Banana | nucleus | 34.3 | 50.86 |
| GSMUA_Achr7P20950_001 | Banana | nucleus | 34.88 | 50.85 |
| Bra003980.1-P | Field mustard | nucleus | 37.21 | 50.79 |
| CDY48391 | Canola | nucleus | 37.21 | 50.79 |
| KRG99070 | Soybean | nucleus | 25.29 | 50.58 |
| Solyc01g010600.2.1 | Tomato | nucleus | 35.47 | 50.21 |
| HORVU4Hr1G075170.1 | Barley | nucleus | 36.92 | 49.61 |
| CDY70870 | Canola | nucleus | 43.31 | 49.5 |
| CDY23547 | Canola | nucleus | 40.12 | 49.29 |
| GSMUA_Achr4P00550_001 | Banana | nucleus | 39.83 | 48.93 |
| Zm00001d020804_P001 | Maize | nucleus | 25.29 | 33.33 |
| Zm00001d017422_P001 | Maize | nucleus | 21.8 | 31.91 |
| Zm00001d032316_P001 | Maize | nucleus | 24.13 | 30.74 |
| Zm00001d050310_P001 | Maize | nucleus | 24.13 | 30.51 |
| Zm00001d005951_P001 | Maize | nucleus | 25.29 | 28.52 |
| Zm00001d017920_P001 | Maize | nucleus | 25.58 | 26.67 |
| Zm00001d005692_P001 | Maize | nucleus | 21.8 | 26.5 |
| Zm00001d021268_P001 | Maize | nucleus | 18.02 | 25.94 |
| Zm00001d051749_P001 | Maize | nucleus | 25.29 | 25.66 |
| Zm00001d006195_P001 | Maize | nucleus | 18.02 | 25.41 |
| Zm00001d030532_P002 | Maize | nucleus | 22.09 | 24.92 |
| Zm00001d027991_P001 | Maize | nucleus | 23.26 | 24.54 |
| Zm00001d025964_P001 | Maize | nucleus | 18.9 | 24.25 |
| Zm00001d002799_P001 | Maize | nucleus | 17.73 | 23.37 |
| Zm00001d048227_P001 | Maize | extracellular, nucleus, plastid | 19.77 | 18.38 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100502458 | MapMan:15.5.3.1 | ProteinID:AQL09365.1 | EMBL:BT088234 | UniProt:C4JBN7 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:HTH_motif |
| InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:Leu_zip_homeo | PFAM:PF00046 |
| PFAM:PF02183 | PRINTS:PR00031 | ScanProsite:PS00027 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF176 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0001A4BC25 | EnsemblPlantsGene:Zm00001d048312 | EnsemblPlants:Zm00001d048312_P001 | EnsemblPlants:Zm00001d048312_T001 |
| SEG:seg | : | : | : | : | : |
Description
Homeobox-transcription factor 22Homeobox-leucine zipper protein ATHB-23
Coordinates
chr9:+:154433350..154435680
Molecular Weight (calculated)
37575.2 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.639
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPMASNGMA SSLSPFFPPN FLLQMQQTPS DHDPQEHHHL PAPPLHLHHN PFLPSSQCPS LQDFRGMAPM LRKRPTMYCG ADDVGVGGEE ASCGATNEDE
101: VSDDGSLQAV GPGEKKRRLN VEQVRTLEKN FELGNKLEAE RKLQLARALG LQPRQVAIWF QNRRARWKTK QLEKDYDALR RQLDAVKADN DALLSHNKKL
201: QAEILALKGR EAAGGSSELI NLNKETEASC SNRSEDSSEI NLDISRTPPA SEGPMDHPPP PPPHHAAGGG LIPFYPSVGG RHSIAAGVGM DQLLHASTPK
301: LEQHGDGCAV AVQAAETAGS FGNLLCGVDE TPPFWPWADH HHFH
101: VSDDGSLQAV GPGEKKRRLN VEQVRTLEKN FELGNKLEAE RKLQLARALG LQPRQVAIWF QNRRARWKTK QLEKDYDALR RQLDAVKADN DALLSHNKKL
201: QAEILALKGR EAAGGSSELI NLNKETEASC SNRSEDSSEI NLDISRTPPA SEGPMDHPPP PPPHHAAGGG LIPFYPSVGG RHSIAAGVGM DQLLHASTPK
301: LEQHGDGCAV AVQAAETAGS FGNLLCGVDE TPPFWPWADH HHFH
001: MSCNNGMSFF PSNFMIQTSY EDDHPHQSPS LAPLLPSCSL PQDLHGFASF LGKRSPMEGC CDLETGNNMN GEEDYSDDGS QMGEKKRRLN MEQVKTLEKN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
101: FELGNKLEPE RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDTLK RQFDTLKAEN DLLQTHNQKL QAEIMGLKNR EQTESINLNK ETEGSCSNRS
201: DNSSDNLRLD ISTAPPSNDS TLTGGHPPPP QTVGRHFFPP SPATATTTTT TMQFFQNSSS GQSMVKEENS ISNMFCAMDD HSGFWPWLDQ QQYN
Arabidopsis Description
ATHB-13Homeobox-leucine zipper protein ATHB-13 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC03]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.