Factsheet for Zm00001d005951_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020804_P001	Maize	nucleus	75.74	88.51
Os09t0470500-01	Rice	nucleus	69.18	76.17
TraesCS5D01G256200.1	Wheat	nucleus	67.21	75.93
TraesCS5B01G246700.1	Wheat	nucleus	66.89	75.84
HORVU5Hr1G070260.1	Barley	nucleus	66.23	75.66
TraesCS5A01G249000.1	Wheat	nucleus	66.89	75.56
GSMUA_Achr7P12740_001	Banana	nucleus	38.36	51.32
GSMUA_Achr10P...	Banana	nucleus	40.98	50.61
GSMUA_Achr3P06620_001	Banana	nucleus	44.92	50.0
GSMUA_Achr10P...	Banana	nucleus	30.49	48.95
GSMUA_Achr6P10310_001	Banana	nucleus	32.79	48.31
GSMUA_Achr7P11760_001	Banana	nucleus	39.02	47.22
GSMUA_Achr10P...	Banana	nucleus	39.34	45.63
GSMUA_Achr9P14960_001	Banana	nucleus	41.97	45.55
GSMUA_Achr2P14750_001	Banana	extracellular, nucleus	40.66	43.36
Zm00001d030532_P002	Maize	nucleus	38.03	38.03
Zm00001d027991_P001	Maize	nucleus	35.74	33.44
Zm00001d032316_P001	Maize	nucleus	28.52	32.22
Zm00001d050310_P001	Maize	nucleus	28.52	31.99
Zm00001d021268_P001	Maize	nucleus	22.95	29.29
Zm00001d017422_P001	Maize	nucleus	21.97	28.51
Zm00001d048227_P001	Maize	extracellular, nucleus, plastid	33.44	27.57
Zm00001d006195_P001	Maize	nucleus	21.97	27.46
Zm00001d005692_P001	Maize	nucleus	25.25	27.21
Zm00001d017920_P001	Maize	nucleus	29.18	26.97
Zm00001d025964_P001	Maize	nucleus	23.61	26.87
Zm00001d051749_P001	Maize	nucleus	29.51	26.55
Zm00001d002799_P001	Maize	nucleus	22.62	26.44
Zm00001d014201_P001	Maize	nucleus	29.84	26.15
Zm00001d048312_P001	Maize	nucleus	28.52	25.29
Zm00001d027852_P001	Maize	nucleus	28.2	25.0
Zm00001d033005_P001	Maize	nucleus	29.51	24.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100194336	MapMan:15.5.3.1	UniProt:A0A1D6ERN8	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:HTH_motif	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:Leu_zip_homeo	ProteinID:ONM22402.1	PFAM:PF00046	PFAM:PF02183
PRINTS:PR00031	ScanProsite:PS00027	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF317	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI000844A837	EnsemblPlantsGene:Zm00001d005951	EnsemblPlants:Zm00001d005951_P001	EnsemblPlants:Zm00001d005951_T001	SEG:seg

Description

Homeobox-transcription factor 54Homeobox-leucine zipper protein ATHB-6

Coordinates

chr2:+:193728105..193730506

Molecular Weight (calculated)

33045.6 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.473

Length

305 amino acids

Sequence
(BLAST)

001: MKRPRGATPS LSAMPNHQEG IHCSGLLWGW VMSWRECVRN EDLSPCACVF PDDGYGVLGM EADVDVDVDE EMMAFGGGGG GEKKRRLSAE QVRALERSFE
101: VENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYAALRRS YDALRLDHDA LRRDKDALLA EIRELKAKLG DDEDAAASFT SVKAEPAASD
201: GPAPAGVGSS EISDSSAVLN DADPPVAEAP APAPEVQGTL LVAPAGPVAG AAAANHGGVF FHGSFLKVEE DETGLLDDDG PCGGFFAVEQ PPAMAWWNEP
301: AEHWN

Best Arabidopsis Sequence Match ( AT4G40060.1 )
(BLAST)

001: MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYDED ATLIEEYSGN HHHMGLSEKK RRLKVDQVKA LEKNFELENK LEPERKTKLA QELGLQPRQV
101: AVWFQNRRAR WKTKQLEKDY GVLKGQYDSL RHNFDSLRRD NDSLLQEISK IKAKVNGEED NNNNKAITEG VKEEEVHKTD SIPSSPLQFL EHSSGFNYRR
201: SFTDLRDLLP NSTVVEAGSS DSCDSSAVLN DETSSDNGRL TPPVTVTGGS FLQFVKTEQT EDHEDFLSGE EACGFFSDEQ PPSLHWYSAS DHWT

Arabidopsis Description

ATHB-16HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.